View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11005_low_6 (Length: 420)
Name: NF11005_low_6
Description: NF11005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11005_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 115 - 418
Target Start/End: Original strand, 38022176 - 38022478
Alignment:
| Q |
115 |
caagaaaagcaacaaacaaagaaaattatcaataaaggaaaacaggattcccatcgtatacataataaaagaatcaaatctaatcataaacaattacaaa |
214 |
Q |
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| T |
38022176 |
caagaaaagcaacaaacaaagaaaattatcaataaaggaaaacag-attcccatcgtatacataataaaagaatcaaatctaatcataaacaattacaaa |
38022274 |
T |
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| Q |
215 |
acaaggaatcagacaccaacatgattgaattcagaacaacaaatagatcgttagtgcaatattttttgtcatgatccaacaaatttctttaatcaaggaa |
314 |
Q |
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| T |
38022275 |
acaaggaatcagacaccaacatgattgaattcagaacaacaaatagatcgttagtgcaatattttttgtgatgatccaacaaatttctttaatcaaggaa |
38022374 |
T |
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| Q |
315 |
aacacagtggagaaagatgaaggaagtgagagtaatctcaaactctcttaactgtgatttccctgattnnnnnnnttcaatagatcaattagcctccacc |
414 |
Q |
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| T |
38022375 |
aacacagtggagaaagatgaaggaagtgagagtaatctcaaactctcttaactgtgatttccctgattaaaaaaattcaatagatcaattagcctccacc |
38022474 |
T |
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| Q |
415 |
tttg |
418 |
Q |
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|||| |
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| T |
38022475 |
tttg |
38022478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 287 - 382
Target Start/End: Original strand, 38018175 - 38018271
Alignment:
| Q |
287 |
gatccaacaaatttctttaatc-aaggaaaacacagtggagaaagatgaaggaagtgagagtaatctcaaactctcttaactgtgatttccctgatt |
382 |
Q |
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| T |
38018175 |
gatccaacaaatttctttaatctaagaaaaacacaatggagaaagattaagggagtgagaggaaacacaaactctcttgactgtgatttccttgatt |
38018271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 285 - 351
Target Start/End: Original strand, 38025240 - 38025305
Alignment:
| Q |
285 |
atgatccaacaaatttctttaatcaaggaaaacacagtggagaaagatgaaggaagtgagagtaatc |
351 |
Q |
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| T |
38025240 |
atgatccaacaaatttgtttaatcatggaaacc-cagtggagaaagatggaggaagtgagaggaatc |
38025305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 18234761 - 18234664
Alignment:
| Q |
285 |
atgatccaacaaatttctttaatcaaggaaaacacagtggagaaagatgaaggaagtgagagtaatctcaaactctcttaactgtgatttccctgatt |
382 |
Q |
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|||||||||||||| |||||||||| || || ||||||| |||||| |||||||||| |||| ||||||| |||| ||||| |||||||||| ||||| |
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| T |
18234761 |
atgatccaacaaatctctttaatcaggggaaccacagtgaagaaaggtgaaggaagttagagaaatctcatactcccttaagtgtgatttccttgatt |
18234664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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