View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11005_low_7 (Length: 415)
Name: NF11005_low_7
Description: NF11005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11005_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 35018511 - 35018894
Alignment:
| Q |
19 |
caacttccataaacaatcccttttcctttaatcctttcattgaacccttctggtaaagcttcttcaatagactcaaatccattaggtggtttaagtgctg |
118 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| |||||||||| |
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| T |
35018511 |
caacttccatacacaatcccttttcctttaatcctttcattgaacccttctggtaaagcttcttcaattgactcaaatccaattggtggcttaagtgctg |
35018610 |
T |
|
| Q |
119 |
caagaaatggaatacctgttaactcaagaccaagtaacaactccttaaactgattttttgctaatggaccttcacttccatatgcacaaaaaaccacaga |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| | ||| |||||| || |||||||||||||||||||||| |||||||||| |||||| |
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| T |
35018611 |
caagaaatggaaaacctgttaactcaagaccaagtaacaactcttgaaattgatttgtttctaatggaccttcacttccatacgcacaaaaaatcacaga |
35018710 |
T |
|
| Q |
219 |
accatgtttgaatcccttaagccatgattcccatttttcatataaagtagtttttggtggctcaggtaaaagaggacctgaaagtaaaacaggttttcca |
318 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||| || | |||||||| |||||||||||||||||| |||||||||||||| | ||||||||||||| |
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| T |
35018711 |
accatgtttgaattccttaagccatgttaaccatttctcctctaaagtagcttttggtggctcaggtaacagaggacctgaaagcagaacaggttttcca |
35018810 |
T |
|
| Q |
319 |
aaaagattttcaacataatcagcatatagtccatcaatttctctgcaacctttgaaagcaactgcatctgaaaactttgtgcct |
402 |
Q |
| |
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|||| | |||||| ||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
35018811 |
aaaacagtttcaagataatcagcatatagaccatcaatctctctgcaacctttgaaagaaactgcatctgaagactttgtgcct |
35018894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 35027140 - 35026773
Alignment:
| Q |
19 |
caacttccataaacaatcccttttcctttaatcctttcattgaacccttctggtaaagcttcttcaatagactcaaatccattaggtggtttaagtgctg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35027140 |
caacttccataaacaatcccttttcctttaactctttcattgaacccttctggtaaagcttcttcaatagactcaaatccattaggtggtttaagtgctg |
35027041 |
T |
|
| Q |
119 |
caagaaatggaatacctgttaactcaagaccaagtaacaactccttaaactgattttttgctaatggaccttcacttccatatgcacaaaaaaccacaga |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
35027040 |
caagaaatggaaaacctgttaactcaagaccaagcaacaactcttgaaactgatttttttctaatggaccttcacttccatatgcacaaaacaccacaga |
35026941 |
T |
|
| Q |
219 |
accatgtttgaatcccttaagccatgattcccatttttcatataaagtagtttttggtggctcaggtaaaagaggacctgaaagtaaaacaggttttcca |
318 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| | |||||||||||||| | |||||||||| |
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|
| T |
35026940 |
accaggtttgaatcccttaagccatgattcccatttttcatctaaagttgtttttggtgtttcaggtaacaaaggacctgaaagtagataaggttttcca |
35026841 |
T |
|
| Q |
319 |
aaaagattttcaacataatcagcatatagtccatcaatttctctgcaacctttgaaagcaactgcatc |
386 |
Q |
| |
|
||| |||| ||| | | ||||||||| || |||||| |||| |||||||||||||| ||| |||||| |
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|
| T |
35026840 |
taaaaatttccaagaaattcagcatatggttcatcaagttctttgcaacctttgaaaccaattgcatc |
35026773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 23 - 398
Target Start/End: Original strand, 35011489 - 35011864
Alignment:
| Q |
23 |
ttccataaacaatcccttttcctttaatcctttcattgaacccttctggtaaagcttcttcaatagactcaaatccattaggtggtttaagtgctgcaag |
122 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| || ||||||||| ||||||| |||||||||||||| |
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|
| T |
35011489 |
ttccataaacaatcccttttccattaaccctttcattgaacccttcaggtaaagcttcttcaattgaatcaaatccaataggtggcttaagtgctgcaag |
35011588 |
T |
|
| Q |
123 |
aaatggaatacctgttaactcaagaccaagtaacaactccttaaactgattttttgctaatggaccttcacttccatatgcacaaaaaaccacagaacca |
222 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||| | ||| ||||| | | || ||| |||||||||||||| ||||||||||||||||||||| |
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|
| T |
35011589 |
aaatggaaaacctgttaattcaagaccaagtaacaactcttgaaattgattatgttgtagtgggccttcacttccatacgcacaaaaaaccacagaacca |
35011688 |
T |
|
| Q |
223 |
tgtttgaatcccttaagccatgattcccatttttcatataaagtagtttttggtggctcaggtaaaagaggacctgaaagtaaaacaggttttccaaaaa |
322 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||| | |||||||| |||||||| ||| ||||| | |||||||||||| | ||||||||||||||||| |
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|
| T |
35011689 |
tgtttgaatccctcaagccatgttaaccatttttcctctaaagtagattttggtgcctcgggtaataaaggacctgaaagcagaacaggttttccaaaaa |
35011788 |
T |
|
| Q |
323 |
gattttcaacataatcagcatatagtccatcaatttctctgcaacctttgaaagcaactgcatctgaaaactttgt |
398 |
Q |
| |
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| |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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|
| T |
35011789 |
cagtttcaagataatcagcatatagtccatcaatttctctgcagcctttgaaagaaactgcatctgaaaactttgt |
35011864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 35034149 - 35033780
Alignment:
| Q |
19 |
caacttccataaacaatcccttttcctttaatcctttcattgaacccttctggtaaagcttcttcaatagactcaaatccattaggtggtttaagtgctg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||| |
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|
| T |
35034149 |
caacttccataaacaatcccttttcctttaatcctttcattgaacccttctggtaaagcttcttcaatagactcaaatccaataggaggctttagtgctg |
35034050 |
T |
|
| Q |
119 |
caagaaatggaatacctgttaactcaagaccaagtaacaactccttaaactgattttttgctaatggaccttcacttccatatgcacaaaaaaccacaga |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35034049 |
caagaaatggaaaacctgttaactcaaggccaagcaacaactctagaaactgatttttttctaatggaccttcacttccatatgcacaaaaaaccacaga |
35033950 |
T |
|
| Q |
219 |
accatgtttgaatcccttaagccatgattcccatttttcatataaagtagtttttggtggctcaggtaaaagaggacctgaaagtaaaacaggttttcca |
318 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||| | || || || |||| |||||||||||| | |||||||||||| | ||||||||||||| |
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|
| T |
35033949 |
accattttcaaatcccttaagccatgaaatccatttttcctctagtgttgtatttgttggctcaggtaacacaggacctgaaagcagaacaggttttcca |
35033850 |
T |
|
| Q |
319 |
aaaagattttcaacataatcagcatatagtccatcaatttctctgcaacctttgaaagcaactgcatctg |
388 |
Q |
| |
|
|||| | |||||| ||||||||||||| ||||||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
35033849 |
aaaacagtttcaatataatcagcatatggtccatcaacttcattgcaacctttgaaaccaactgcatctg |
35033780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 193 - 402
Target Start/End: Original strand, 34998174 - 34998381
Alignment:
| Q |
193 |
cttccatatgcacaaaaaaccacagaaccatgtttgaatcccttaagccatgattcccatttttcatataaagtagtttttggtggctcaggtaaaagag |
292 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||| | | ||||||||| | |||||||| |||||||| ||||||||| | || |
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|
| T |
34998174 |
cttccatatgcacaataaaccacgaaaccatgtttgaatcccttaagccgttaa--ccatttttcctctaaagtagattttggtgcctcaggtaataaag |
34998271 |
T |
|
| Q |
293 |
gacctgaaagtaaaacaggttttccaaaaagattttcaacataatcagcatatagtccatcaatttctctgcaacctttgaaagcaactgcatctgaaaa |
392 |
Q |
| |
|
|||||||||| | ||||||||| || |||| | ||| | ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34998272 |
gacctgaaagcagaacaggtttacccaaaacagtttgtagatattcagcatacaaaccatcaatttctctgcaacctttgaaagcaactgcatctgaaaa |
34998371 |
T |
|
| Q |
393 |
ctttgtgcct |
402 |
Q |
| |
|
|||||||||| |
|
|
| T |
34998372 |
ctttgtgcct |
34998381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 34998082 - 34998157
Alignment:
| Q |
19 |
caacttccataaacaatcccttttcctttaatcctttcattgaacccttctggtaaagcttcttcaatagactcaa |
94 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34998082 |
caacttccatatacaatcccttttcctttaatcctttcattgaacccttctagtaaagcttcttcaatagactcaa |
34998157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 35009865 - 35009575
Alignment:
| Q |
30 |
aacaatcccttttcctttaatcctttcattgaacccttctggtaaagcttcttcaatagactcaaatccattaggtggtttaagtgctgcaagaaatgga |
129 |
Q |
| |
|
||||||||||||| | |||| |||||| | ||||||||||| ||||| ||||| | | ||||| ||| |||| |||||||| ||| | ||||||| |
|
|
| T |
35009865 |
aacaatccctttttccttaaccctttcttcaaacccttctggaaaagcatcttcgaccgtttcaaaaccaataggaggtttaagaattgccaaaaatgga |
35009766 |
T |
|
| Q |
130 |
atacctgttaactcaagaccaagtaacaactccttaaactgattttttgctaatggaccttcacttccatatgcacaaaaaaccacagaaccatgtttga |
229 |
Q |
| |
|
||||||||||||||| || | || || || | |||||| |||| || |||| | |||||||||| ||||||| |||| | ||||| | || | |
|
|
| T |
35009765 |
taacctgttaactcaagtcccaacaataattcatgaaactgcttttgtgataatttagattcacttccaagtgcacaataaactaatgaaccgtccttaa |
35009666 |
T |
|
| Q |
230 |
atcccttaagccatgattcccatttttcatataaagtagtttttggtggctcaggtaaaagaggacctgaaagtaaaacaggttttccaaa |
320 |
Q |
| |
|
|||| |||||||| || |||||||||||| |||| |||||| ||||| |||||||||| ||| |||||||| | ||||||||| ||||| |
|
|
| T |
35009665 |
atccattaagccaagaaccccatttttcatctaaaacagttttaggtggttcaggtaaaacaggtcctgaaagaagaacaggtttaccaaa |
35009575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 36289414 - 36289124
Alignment:
| Q |
30 |
aacaatcccttttcctttaatcctttcattgaacccttctggtaaagcttcttcaatagactcaaatccattaggtggtttaagtgctgcaagaaatgga |
129 |
Q |
| |
|
||||||||||||| | |||| |||||| || ||||||||||| ||||| ||||| | | |||||| ||| ||| |||||||| ||| | ||||||| |
|
|
| T |
36289414 |
aacaatccctttttccttaaccctttctttaaacccttctggcaaagcatcttcgaccgtctcaaacccaacaggaggtttaagaattgccaaaaatgga |
36289315 |
T |
|
| Q |
130 |
atacctgttaactcaagaccaagtaacaactccttaaactgattttttgctaatggaccttcacttccatatgcacaaaaaaccacagaaccatgtttga |
229 |
Q |
| |
|
|| ||||||||| || || | ||||| || | |||||||| || || |||| | |||||||||| ||||||| |||| | ||||||| | | |
|
|
| T |
36289314 |
taacatgttaactctagtcctaacaacaattcatgaaactgatcttgtgataatttccattcacttccaagtgcacaataaactaatgaaccatcctaaa |
36289215 |
T |
|
| Q |
230 |
atcccttaagccatgattcccatttttcatataaagtagtttttggtggctcaggtaaaagaggacctgaaagtaaaacaggttttccaaa |
320 |
Q |
| |
|
|||| |||||| || |||||||||||| ||||||| |||| ||||| |||||||||| ||| |||||||| | |||||| || ||||| |
|
|
| T |
36289214 |
atccaccaagccaagaaccccatttttcatctaaagtatttttaggtggttcaggtaaaacaggtcctgaaagaagaacaggcttaccaaa |
36289124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 320
Target Start/End: Original strand, 35036227 - 35036358
Alignment:
| Q |
189 |
ttcacttccatatgcacaaaaaaccacagaaccatgtttgaatcccttaagccatgattcccatttttcatataaagtagtttttggtggctcaggtaaa |
288 |
Q |
| |
|
|||||||||| ||||||| |||| | ||||||| ||| ||||| |||||| || |||||||||||| |||| |||||| ||||| ||||||||| |
|
|
| T |
35036227 |
ttcacttccaagtgcacaataaactaatgaaccatctttaaatccaccaagccaagaaccccatttttcatctaaaacagttttaggtggttcaggtaaa |
35036326 |
T |
|
| Q |
289 |
agaggacctgaaagtaaaacaggttttccaaa |
320 |
Q |
| |
|
| ||| |||||||| | |||||| || ||||| |
|
|
| T |
35036327 |
acaggtcctgaaagaagaacaggcttaccaaa |
35036358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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