View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_high_13 (Length: 428)
Name: NF11006_high_13
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 15889499 - 15889889
Alignment:
| Q |
19 |
acatgacactgacacatgttacatttaatcacttgtattttttaaactattaccaaaacctacgtgtcaatatgagtgtcgtgtctatatcagtgcttta |
118 |
Q |
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| T |
15889499 |
acatgacactgacacatgttacatttaatcgcttgtattttttaaactattaccaaaacctatgtgtcaatatgagtgtcgtgtctatatcagtgct--- |
15889595 |
T |
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| Q |
119 |
tagattgcaatttggtaaaaccatgaattcttattaaggaacaaaatcactcacatttacaattttcttagg-gctaaacagttaaaatgtattatacta |
217 |
Q |
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| T |
15889596 |
-agattgcaatttggtaaaatcatgaattcttattaaggaacaaaatcactcacactttcaattctcttaagtgccaaacaattgaaatgtattatacta |
15889694 |
T |
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| Q |
218 |
aactactagtactaactttcatccaataaaatccaagaattgattaaaatttaacaaataatcaatacaagtatattcaaattgatgaaactctagaaga |
317 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15889695 |
aactactagtactaactttcatccaataaaatcagaaaattgattaaaatttaacaaataatcaatacaagtatgttcaaattgatgaaactctagaaga |
15889794 |
T |
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| Q |
318 |
acctggtttgtttcttggagctcgacgagagataagcccgaaaacttgcttaatattaatttgatgacctctgagaaaacaactctcatttgatg |
412 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15889795 |
acctgctttgtttcttggagctcgacgagagataagcccgaaaacttgcttaatattaatttgatgacctctgagaaaacaactctcatttgatg |
15889889 |
T |
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