View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11006_high_14 (Length: 412)
Name: NF11006_high_14
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_high_14 |
 | |
|
| [»] scaffold0691 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Complemental strand, 2807683 - 2807297
Alignment:
| Q |
19 |
acctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2807683 |
acctttattgttgttaggcatagcaaattcaacctggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaggtat |
2807584 |
T |
|
| Q |
119 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807583 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
2807484 |
T |
|
| Q |
219 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807483 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacgacaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagt |
2807384 |
T |
|
| Q |
319 |
ggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctct |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2807383 |
ggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctct |
2807297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 2838322 - 2838708
Alignment:
| Q |
19 |
acctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtat |
118 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| | |||| |
|
|
| T |
2838322 |
acctttattgttattaggcatggcaaattcaatctggtcggaaaaatcttcttgccaaacatcatcaaagaatatcaagtacctcttatgttggaggtat |
2838421 |
T |
|
| Q |
119 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
218 |
Q |
| |
|
|||||||||||| |||||||||| | ||||||| |||| | ||| | | ||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
2838422 |
tgcctcacttcttcaatcagtgactggtcatcctttttgtgcaacatctgtggaagagggtcttcagttccccgacaaaattgctccatcatgtttatca |
2838521 |
T |
|
| Q |
219 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagt |
318 |
Q |
| |
|
||| |||||||||||||||||||||||||||| || ||||||| |||||||||| || ||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
2838522 |
acaaacctctcacagtgtatgattgagaaactgtgacgcaagcataacaatcaaagtttgctgttaccttttggctttcaaaaactagcttggcaagagt |
2838621 |
T |
|
| Q |
319 |
ggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctct |
405 |
Q |
| |
|
||||||||||||||| |||||||||||||| || || || |||||||||||| ||||||||||||||||| || | ||||||||||| |
|
|
| T |
2838622 |
ggtttttcctagaccccccattcctaccactgatatgactgtgcgctcagctgcaccctccaataaccaaccatatatttcttctct |
2838708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 403
Target Start/End: Original strand, 2855532 - 2855916
Alignment:
| Q |
19 |
acctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtat |
118 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
2855532 |
acctttattgttattaggcatggcaaattcaacctggtcggaaaaatcttcttgccaaacatcatcaaagaataccaaatacctcttatgttgcaggtat |
2855631 |
T |
|
| Q |
119 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
218 |
Q |
| |
|
||||| |||| || ||||||||| | |||||||| |||| | ||| | ||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
2855632 |
tgccttacttgtataatcagtgactggtcatccattttgtgcaacatcagtggaagagggtcttcagttccccgacaaaattgctccatcatgtttatca |
2855731 |
T |
|
| Q |
219 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagt |
318 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||| ||||||| ||||||||||||||| |
|
|
| T |
2855732 |
acaaacctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgttgttaccttttggctgtcaaaaattagcttggcaagagt |
2855831 |
T |
|
| Q |
319 |
ggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttct |
403 |
Q |
| |
|
|||||||||| ||| |||||||| ||||| |||||||| ||||||||| || ||| |||||||||||| |||||| ||||||| |
|
|
| T |
2855832 |
agtttttcctataccccccattcccaccactgaaatcactttgcgctcagatataccttccaataaccaaccagacaattcttct |
2855916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 2759630 - 2759261
Alignment:
| Q |
19 |
acctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtat |
118 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
2759630 |
acctttgttgttattaggcatggcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttctaggtat |
2759531 |
T |
|
| Q |
119 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
218 |
Q |
| |
|
| ||| || ||| ||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
2759530 |
ttccttacctctgtaatcagtgacctgtcatccattttgtgtaacttctttggaagagggtcttcagtttcctgacaaaattgcgccatcatttttatca |
2759431 |
T |
|
| Q |
219 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagt |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
2759430 |
gtaatcctctcacagtgtatgattgagaaactacgatgcaagcttgacaatcaaactgtgttgttaccttttggctgtcaaaaactagcttggcaagagt |
2759331 |
T |
|
| Q |
319 |
ggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaa |
388 |
Q |
| |
|
|||||| || ||||| |||||||||||||| |||||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
2759330 |
ggttttgccgagaccccccattcctaccactgaaatcactgtgcgttcagctgaaccctccaataaccaa |
2759261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 5413302 - 5412918
Alignment:
| Q |
19 |
acctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtat |
118 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5413302 |
acctttattgtttttaggcatcgcaaattcaacctggtcagagaaatcttgttgccatacatcatcaaagaatatcaaatacctcttatgttgcaggtat |
5413203 |
T |
|
| Q |
119 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
218 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| |||| ||||| | | ||||||| |||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
5413202 |
tgcctcacttctataatcagtgaccggtcatccattttgtgtaacatctgcggaagagagtcttcagttccccgacaaaattgctccatcatgtttatca |
5413103 |
T |
|
| Q |
219 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagt |
318 |
Q |
| |
|
||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||| || |||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
5413102 |
acaaacctctcacagtgtatgattgagaaactgttacgcaagcacaacaatcaaagtgtgctgataccttttggctttcaaaaactagcttggcaagagt |
5413003 |
T |
|
| Q |
319 |
ggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttct |
403 |
Q |
| |
|
|||||||||||| || |||||||||||||| || || || || || || ||| |||| |||||||||||| |||||| ||||||| |
|
|
| T |
5413002 |
ggtttttcctaggccccccattcctaccactgatatgactgtacgttccgctgcaccatccaataaccaaccagacaattcttct |
5412918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 2749411 - 2749027
Alignment:
| Q |
19 |
acctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtat |
118 |
Q |
| |
|
|||||||||||| || ||||| ||||||| ||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2749411 |
acctttattgttatttggcatggcaaattgaacctggtccgcaaaatcttcttgccatacgtcatcaaagaatatcaaatacctcttatgttgcaggtat |
2749312 |
T |
|
| Q |
119 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
218 |
Q |
| |
|
||||||||||||| ||| ||||| | |||||||| |||| ||||| | | |||||| ||||| ||| | |||| |||||||||||||||||||||| |
|
|
| T |
2749311 |
tgcctcacttctataattagtgactggtcatccattttgtgtaacatctgcagaagagagtctttagtactccgacagaattgctccatcatgtttatca |
2749212 |
T |
|
| Q |
219 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagt |
318 |
Q |
| |
|
||| |||||||||||||| ||||||||||||| || ||||||||| ||||||||||||| || |||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
2749211 |
acaaacctctcacagtgtaagattgagaaactgtgacgcaagcacgacaatcaaagtgtgctgatacctttttgctttcaaaaactagcttggcaagagt |
2749112 |
T |
|
| Q |
319 |
ggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttct |
403 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || |||||||||||||||||| |||| |||||||||||| |||||| ||||||| |
|
|
| T |
2749111 |
ggtttttcctaggcctcccattcctaccacggatatcaccgtgcgctcagcttcaccatccaataaccaaccagacagttcttct |
2749027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 405
Target Start/End: Complemental strand, 2769482 - 2769099
Alignment:
| Q |
22 |
tttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtattgc |
121 |
Q |
| |
|
||||||||| || ||||| | ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | |
|
|
| T |
2769482 |
tttattgttatttggcatggaaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgtaggtatttc |
2769383 |
T |
|
| Q |
122 |
ctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatca |
221 |
Q |
| |
|
|| || |||| | |||||| ||||||||| |||| ||||| | ||| | ||||| |||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
2769382 |
cttacctctattaccagtgacatgtcatccattttgtgtaacatctttagcagaggttcttcagtttcctgacaaaattgctccatcatttttatcagta |
2769283 |
T |
|
| Q |
222 |
accctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||| ||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
2769282 |
accctctcacagtgtatgattgagaaactgtgatgcaagcacgacaatcaaagtttgcagttaccttttggctgtcataaactagtttggcaagagtggt |
2769183 |
T |
|
| Q |
322 |
ttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctct |
405 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||| ||||||| |||| ||||||||||||||||| || | | ||||||||| |
|
|
| T |
2769182 |
ttttcctagaccccccattcctaccactgatatcactgtgcgcttagctgcaccctccaataaccaaccaaataattcttctct |
2769099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 2818973 - 2818586
Alignment:
| Q |
19 |
acctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtat |
118 |
Q |
| |
|
|||||| ||||| || ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| |
|
|
| T |
2818973 |
acctttgttgttattgggcatggcaaattcaacctggtcggaaaaatcttcttgccatacatcatcaaagaatattaaatacctcttatgttctaggtat |
2818874 |
T |
|
| Q |
119 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
218 |
Q |
| |
|
| ||| || |||| ||||||| | ||||||||| ||||||||| | | | || ||||||||||| ||||||| |||||||||||||||| ||||||| |
|
|
| T |
2818873 |
ttccttacctctataatcagtaacctgtcatccattttgcgtaaaatctctagatcagggtcttcagcttcctgataaaattgctccatcatttttatca |
2818774 |
T |
|
| Q |
219 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagt |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||| || |||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
2818773 |
gtaatcctctcacagtgtatgattgagaaactacgatgcaagctcgacaatcaaactgtgttgttaccttttggctgtcaaaaactagcttggcaagagt |
2818674 |
T |
|
| Q |
319 |
ggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttctctc |
406 |
Q |
| |
|
||||||||||||||| |||||||||||||| || ||||| |||||||| ||| ||||||||||||||||| || | | |||||||||| |
|
|
| T |
2818673 |
ggtttttcctagaccccccattcctaccactgatatcactgtgcgctcggctgcaccctccaataaccaaccatatagttcttctctc |
2818586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 21 - 402
Target Start/End: Complemental strand, 2797775 - 2797394
Alignment:
| Q |
21 |
ctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtattg |
120 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
2797775 |
ctttgttgttattaggcatggcaaattcaacctggtcagaaaagtcttcttgccatacatcatcaaagaatatcaaatactttttatgttgcaggtattg |
2797676 |
T |
|
| Q |
121 |
cctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatcatc |
220 |
Q |
| |
|
|||||||| || ||||| ||| |||||||||| |||| ||||| | | ||||||| ||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
2797675 |
cctcacttgtataatcaatgacttgtcatccattttgtgtaacatctgcaaaagagggctttcagtttcgctacaaaattcctccatcatgttgatcaat |
2797576 |
T |
|
| Q |
221 |
aaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtgg |
320 |
Q |
| |
|
| ||| ||||| ||||||||||||||||||| |||||||||||| |||||||| | |||||||||| |||| || || |||||||||||||||||||||| |
|
|
| T |
2797575 |
atccccctcacggtgtatgattgagaaactgtgatgcaagcacgacaatcaaattttgttgttaccttttgactgtcgaaaactagcttggcaagagtgg |
2797476 |
T |
|
| Q |
321 |
tttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttc |
402 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |||||||||||| ||||| | ||||||| |||||| |||||| |
|
|
| T |
2797475 |
tttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctctagtaaccaaccagacaattcttc |
2797394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 19 - 264
Target Start/End: Complemental strand, 2790736 - 2790491
Alignment:
| Q |
19 |
acctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtat |
118 |
Q |
| |
|
|||||||||||| || || || |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| | ||||||| || |||| |
|
|
| T |
2790736 |
acctttattgttatttggaatggcaaattcaatctggtcggaaaaatcttcttgccatacatcatcgaagaatatcaaatactttttatgtttcaggtat |
2790637 |
T |
|
| Q |
119 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
218 |
Q |
| |
|
|||||||||| || ||| ||||| |||||||||| |||| ||||| | | ||||||| |||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
2790636 |
tgcctcacttgtagaatgagtgacttgtcatccattttgtgtaacatctgcaaaagagggccttcagtttcgctacaaaattcctccatcatgttgatca |
2790537 |
T |
|
| Q |
219 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacg |
264 |
Q |
| |
|
| ||| ||||| ||| ||||||||||||| | |||||||||||| |
|
|
| T |
2790536 |
atatccccctcacggtgaatgattgagaaacggtgatgcaagcacg |
2790491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 402
Target Start/End: Complemental strand, 2790491 - 2790400
Alignment:
| Q |
311 |
gcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaaacagacatttcttc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||||||||||||||| |||||| |||||| |
|
|
| T |
2790491 |
gcaagagtggtttttcctagacctcccattccaaccactgaaatcactgtgcgctcagctgtgccctccaataaccaaccagacaattcttc |
2790400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 21945728 - 21945658
Alignment:
| Q |
296 |
tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
||||||||| |||||| ||||||||||||||| | ||||||||||||||||| |||| || |||||||| |
|
|
| T |
21945728 |
tcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacggaaactacagtgcgctc |
21945658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 22104827 - 22104757
Alignment:
| Q |
296 |
tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||| | |||||||||||||||||||||| || |||||||| |
|
|
| T |
22104827 |
tcaaaaactctcttggctagagttgtttttccttgccctcccattcctaccaccgaaactacagtgcgctc |
22104757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 22648533 - 22648590
Alignment:
| Q |
309 |
tggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| || || || |||||||| |
|
|
| T |
22648533 |
tggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctc |
22648590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 21930525 - 21930455
Alignment:
| Q |
296 |
tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| |||||||| |
|
|
| T |
21930525 |
tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
21930455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 22028104 - 22028034
Alignment:
| Q |
296 |
tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| |||||||| |
|
|
| T |
22028104 |
tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
22028034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 22034621 - 22034551
Alignment:
| Q |
296 |
tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| || | ||| |||||||| |
|
|
| T |
22034621 |
tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctc |
22034551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 22052837 - 22052767
Alignment:
| Q |
296 |
tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||| | |||||||||||||||| |||| ||| |||||||| |
|
|
| T |
22052837 |
tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccagagaaaccacagtgcgctc |
22052767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 22187092 - 22187022
Alignment:
| Q |
296 |
tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||| | ||||||||||||||||| |||| || |||||||| |
|
|
| T |
22187092 |
tcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctc |
22187022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 353
Target Start/End: Complemental strand, 3721747 - 3721626
Alignment:
| Q |
232 |
agtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagtggtttttcctaga |
331 |
Q |
| |
|
|||||| ||||||||||||| ||| ||| | |||||||||||| || | ||| ||| |||||||||| |||| |||||||| |||||||| || |
|
|
| T |
3721747 |
agtgtaggattgagaaactgttatgaaagagcagcaatcaaagtggcttttcaccaactggttatcaaaaacatgcttagcaagagttgtttttccgagt |
3721648 |
T |
|
| Q |
332 |
cctcccattcctaccaccgaaa |
353 |
Q |
| |
|
|||||||| |||||||| |||| |
|
|
| T |
3721647 |
cctcccatgcctaccacagaaa |
3721626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 21937239 - 21937187
Alignment:
| Q |
314 |
agagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||| || |||||||| |
|
|
| T |
21937239 |
agagtggtttttccttgccctcccattcctaccacagaaacaacagtgcgctc |
21937187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 22115171 - 22115119
Alignment:
| Q |
314 |
agagtggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctc |
366 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||| |||| || |||||||| |
|
|
| T |
22115171 |
agagtggtttttccttgccctcccattcctaccacagaaagaacagtgcgctc |
22115119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 22621288 - 22621328
Alignment:
| Q |
308 |
ttggcaagagtggtttttcctagacctcccattcctaccac |
348 |
Q |
| |
|
||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
22621288 |
ttggcaagagtggattttccttgtcctcccattcctaccac |
22621328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 388
Target Start/End: Original strand, 5874 - 6243
Alignment:
| Q |
19 |
acctttattgttgttaggcatagcaaattcaacttggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaagtat |
118 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5874 |
acctttattgttattaggcatggcaaattcaacctggtcagaaaaatcttcttgccatacatcatcaaagaatatcaaatacctcttatgttgcaggtat |
5973 |
T |
|
| Q |
119 |
tgcctcacttctacaatcagtgatttgtcatccaatttgcgtaacttatttggaagagggtcttcagtttcctgacaaaattgctccatcatgtttatca |
218 |
Q |
| |
|
||||||||||||| ||| | ||| |||||||||| |||| ||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
5974 |
tgcctcacttctataattaatgacttgtcatccattttgtgtaacatttgcggaagagggtcttcagtttcccgacaaaattgctccatcatgtttatga |
6073 |
T |
|
| Q |
219 |
tcaaccctctcacagtgtatgattgagaaactgcgatgcaagcacggcaatcaaagtgtgttgttaccgtttggctatcaaaaactagcttggcaagagt |
318 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
6074 |
gtaaccctctcacggtgtatgtttgagaaactgcgatgcaagcacgacaatcaaattgtgttgttaccttttggctgtcaaaaactagcttggcaagagt |
6173 |
T |
|
| Q |
319 |
ggtttttcctagacctcccattcctaccaccgaaatcaccgtgcgctcagctacaccctccaataaccaa |
388 |
Q |
| |
|
|||||| |||| |||||||||||||||||| ||||| || |||||||||||| || ||||||||||||| |
|
|
| T |
6174 |
ggttttccctatacctcccattcctaccactgaaattacggtgcgctcagctggactctccaataaccaa |
6243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 27294652 - 27294595
Alignment:
| Q |
296 |
tcaaaaactagcttggcaagagtggtttttcctagacctcccattcctaccaccgaaa |
353 |
Q |
| |
|
||||||||| |||| | ||||||||||||||| | ||||||||||||||||| |||| |
|
|
| T |
27294652 |
tcaaaaactttcttgactagagtggtttttccttgtcctcccattcctaccacagaaa |
27294595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University