View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11006_high_15 (Length: 388)

Name: NF11006_high_15
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11006_high_15
NF11006_high_15
[»] chr8 (6 HSPs)
chr8 (20-378)||(31772660-31773017)
chr8 (182-236)||(15131736-15131790)
chr8 (23-76)||(15131839-15131892)
chr8 (171-233)||(27402656-27402718)
chr8 (31-73)||(28421285-28421327)
chr8 (34-74)||(18393439-18393479)
[»] chr4 (10 HSPs)
chr4 (142-236)||(658197-658291)
chr4 (144-236)||(55681019-55681111)
chr4 (26-93)||(44507913-44507980)
chr4 (24-73)||(40289030-40289079)
chr4 (24-70)||(45612316-45612362)
chr4 (26-75)||(18198688-18198737)
chr4 (189-236)||(35530450-35530497)
chr4 (20-73)||(658352-658405)
chr4 (24-73)||(54305856-54305905)
chr4 (25-77)||(17733014-17733065)
[»] chr3 (5 HSPs)
chr3 (137-236)||(43921668-43921767)
chr3 (23-96)||(27044223-27044295)
chr3 (23-62)||(26565536-26565575)
chr3 (24-73)||(10516043-10516092)
chr3 (137-234)||(11411025-11411121)
[»] chr1 (4 HSPs)
chr1 (23-77)||(23432106-23432160)
chr1 (189-236)||(48632325-48632372)
chr1 (28-73)||(3387883-3387928)
chr1 (25-77)||(18488447-18488498)
[»] chr6 (9 HSPs)
chr6 (144-236)||(34010939-34011031)
chr6 (144-236)||(34013819-34013911)
chr6 (24-73)||(14494315-14494364)
chr6 (28-73)||(19294570-19294615)
chr6 (144-236)||(14494170-14494262)
chr6 (139-211)||(17261920-17261992)
chr6 (28-72)||(34011084-34011128)
chr6 (28-72)||(34013722-34013766)
chr6 (26-62)||(57236-57272)
[»] chr5 (2 HSPs)
chr5 (23-79)||(40838137-40838193)
chr5 (28-60)||(38989146-38989178)
[»] chr2 (11 HSPs)
chr2 (182-236)||(32200612-32200666)
chr2 (156-236)||(17651600-17651680)
chr2 (24-80)||(41849235-41849291)
chr2 (190-236)||(4747819-4747865)
chr2 (26-96)||(17651490-17651560)
chr2 (24-62)||(26576300-26576338)
chr2 (23-62)||(32200728-32200767)
chr2 (26-96)||(4747934-4748004)
chr2 (24-73)||(34409458-34409507)
chr2 (163-236)||(41849345-41849418)
chr2 (25-73)||(9929890-9929938)
[»] chr7 (5 HSPs)
chr7 (20-73)||(45215897-45215950)
chr7 (23-95)||(10678527-10678599)
chr7 (49-96)||(27994160-27994207)
chr7 (23-73)||(27616550-27616600)
chr7 (163-236)||(22291166-22291239)
[»] scaffold0002 (1 HSPs)
scaffold0002 (26-75)||(289060-289109)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 31772660 - 31773017
Alignment:
Q  20 tgactgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaagaactgttgaagtaaagnnnnnnnnncaacttttttagga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||         ||||||||||||||    
T  31772660 tgactgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaagaactgtcgaagtaaagaaaaaaaa-caacttttttagga 31772758  T
Q  120 cacttgtctaaactctaagttgtccgacacgtgtcatacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaa 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31772759 cacttgtctaaactctaagttgtccgacacgtgtcatacaagtgtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaa 31772858  T
Q  220 aggtgtccgtgcttcatgcacagccatgaatatgaatttgatttatannnnnnnggtgcagacaaacattatccataaatgaagggttgaaatttgaaaa 319  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  31772859 aggtgtccgtgcttcatacacagccatgaatatgaatttgatttatatttttttggtgcagacaaacattatccataaatgaagggttgaaatttgaaaa 31772958  T
Q  320 ccattttaatttgtaaatttatagatagagcagagtgaatgatcatttatttacctatg 378  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  31772959 ccattttaatttgtaaagttatagatatagcagagtgaatgatcatttatttacctatg 31773017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 15131790 - 15131736
Alignment:
Q  182 tcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||    
T  15131790 tcgacacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcat 15131736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 15131892 - 15131839
Alignment:
Q  23 ctgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtc 76  Q
    ||||||||| ||||||  ||| |||||||||||||||||| |||||||||||||    
T  15131892 ctgagttgttcgacactgctcatatgagtgttatataggtgtcggacaccggtc 15131839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 27402656 - 27402718
Alignment:
Q  171 agtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgctt 233  Q
    ||||| ||||| ||||||||||| |||||||| || |||||  ||||| ||||||||||||||    
T  27402656 agtgtcggacaccgacacgtgtcagacaccacaacacgcctaatcctagaggtgtccgtgctt 27402718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 28421285 - 28421327
Alignment:
Q  31 tccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    ||||||||  |||||||||||||||||||||| ||||||||||    
T  28421285 tccgacacagctcgtatgagtgttatataggtgtcggacaccg 28421327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 18393479 - 18393439
Alignment:
Q  34 gacacgtctcgtatgagtgttatataggtatcggacaccgg 74  Q
    |||||||||| |||||||||||||||||| | |||||||||    
T  18393479 gacacgtctcatatgagtgttatataggtgttggacaccgg 18393439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 658291 - 658197
Alignment:
Q  142 tccgacacgtgtcatacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||||||||||| |||||| ||||||| ||||| ||||| |||||||||||||||||  |||| ||| |||||||| |||||||||||||||||    
T  658291 tccgacacgtgtcgtacaagtgtcatagaagtgtcggacaccgacacgtgtcggacactgcgacacgcttggtcctataggtgtccgtgcttcat 658197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 55681019 - 55681111
Alignment:
Q  144 cgacacgtgtcatacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||| ||||| |||||| ||||||| ||||| ||||| |||| ||||||||||||| |||| ||||| |||||  |||||||||||||||||    
T  55681019 cgacatgtgtcgtacaagtgtcataggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctagtcctcgaggtgtccgtgcttcat 55681111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 44507913 - 44507980
Alignment:
Q  26 agttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaagaactgttgaagta 93  Q
    |||||||||||||||||||||||||||||||||| || || |||| |||| |||| | ||||||||||    
T  44507913 agttgtccgacacgtctcgtatgagtgttatatatgtgtcagacatcggtgcaaggagtgttgaagta 44507980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 40289079 - 40289030
Alignment:
Q  24 tgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    |||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  40289079 tgagttgtccgacatgactcgtatgagtgttatataggtgtcggacaccg 40289030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 45612362 - 45612316
Alignment:
Q  24 tgagttgtccgacacgtctcgtatgagtgttatataggtatcggaca 70  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||||    
T  45612362 tgagttgtccgacacgactcgtatgagtgttatacaggtgtcggaca 45612316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 18198737 - 18198688
Alignment:
Q  26 agttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggt 75  Q
    ||||||| || | |||||||||||||||||||||||| ||||||||||||    
T  18198737 agttgtctgatatgtctcgtatgagtgttatataggtgtcggacaccggt 18198688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 35530450 - 35530497
Alignment:
Q  189 gtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||||||||||| ||| |||||  |||||||||||||||||||||||    
T  35530450 gtgtcggacaccatgacacgcctaatcctaaaggtgtccgtgcttcat 35530497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 658405 - 658352
Alignment:
Q  20 tgactgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    |||||||||||| ||| ||| ||||| |||||||| ||||||| ||||||||||    
T  658405 tgactgagttgttcgaaacggctcgtttgagtgttgtataggtgtcggacaccg 658352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 54305856 - 54305905
Alignment:
Q  24 tgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    ||||||||| |||||| |||||||||||||| ||||||| | ||||||||    
T  54305856 tgagttgtctgacacggctcgtatgagtgttgtataggtgttggacaccg 54305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 17733014 - 17733065
Alignment:
Q  25 gagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtcc 77  Q
    ||||||||||||||| ||||||||| ||||||| |||| || |||||||||||    
T  17733014 gagttgtccgacacggctcgtatgaatgttatagaggtgtc-gacaccggtcc 17733065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 43921767 - 43921668
Alignment:
Q  137 agttgtccgacacgtgtcatacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||||||||||||||||| ||||| ||||||| ||||| ||||| |||  |||||||||||||  ||| || || |||||| |||||||||||||||||    
T  43921767 agttgtccgacacgtgtcagacaagtgtcataggagtgtcggacaccgaagcgtgtcggacaccgtgacacggctagtcctagaggtgtccgtgcttcat 43921668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 27044223 - 27044295
Alignment:
Q  23 ctgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaagaactgttgaagtaaag 96  Q
    ||||||||| ||||||| ||||||||||||||||| |||| |||||||||||| | |||| || ||||||||||    
T  27044223 ctgagttgttcgacacggctcgtatgagtgttatacaggtgtcggacaccggtgc-agaagtgctgaagtaaag 27044295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 26565536 - 26565575
Alignment:
Q  23 ctgagttgtccgacacgtctcgtatgagtgttatataggt 62  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  26565536 ctgagttgtccgacacggctcgtatgagtgttatataggt 26565575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 10516092 - 10516043
Alignment:
Q  24 tgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    ||||||||| |||||| ||||||||||| ||||| |||| ||||||||||    
T  10516092 tgagttgtctgacacgactcgtatgagtattatacaggtgtcggacaccg 10516043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 11411025 - 11411121
Alignment:
Q  137 agttgtccgacacgtgtcatacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttc 234  Q
    |||||||||||| |||||| ||||| ||||||| ||||| ||||| |||| |||||||||| || |||| || || ||| || |||||| | ||||||    
T  11411025 agttgtccgacatgtgtcagacaagtgtcataggagtgtcggaca-cgacgcgtgtcggactccgcgacacggctagtcttagaggtgttcatgcttc 11411121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 23432106 - 23432160
Alignment:
Q  23 ctgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtcc 77  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||    
T  23432106 ctgagttgtccgacacggctcgtatgagtgttatataagtgtcggacaccggtcc 23432160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 48632372 - 48632325
Alignment:
Q  189 gtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    |||||||||||| |||| ||||| |||||| |||||||||||||||||    
T  48632372 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcat 48632325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 3387883 - 3387928
Alignment:
Q  28 ttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    ||||| |||||||||| |||||||||||||||||| | ||||||||    
T  3387883 ttgtcggacacgtctcatatgagtgttatataggtgttggacaccg 3387928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 18488447 - 18488498
Alignment:
Q  25 gagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtcc 77  Q
    ||||||||||||| | ||||||||| |||||||||||| || |||||||||||    
T  18488447 gagttgtccgacatggctcgtatgaatgttatataggtgtc-gacaccggtcc 18488498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 34011031 - 34010939
Alignment:
Q  144 cgacacgtgtcatacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    |||||||||||  ||||| ||||| | ||||| ||||| |||| ||||||||||||| |||| ||||| |||||  |||||||||||||||||    
T  34011031 cgacacgtgtcgcacaagtgtcattggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctagtccttgaggtgtccgtgcttcat 34010939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 34013819 - 34013911
Alignment:
Q  144 cgacacgtgtcatacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||||||||| |||||| ||||| | ||||| ||||| |||| | ||||||||||| |||| ||||| |||||  |||||||||||||||||    
T  34013819 cgacacgtgtcgtacaagtgtcattggagtgtcggacaccgacgcttgtcggacaccgcgacacgcctagtccttgaggtgtccgtgcttcat 34013911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 14494364 - 14494315
Alignment:
Q  24 tgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    |||||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  14494364 tgagttgtccgacacggctcgtattagtgttatataggtgtcggacaccg 14494315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 19294570 - 19294615
Alignment:
Q  28 ttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    |||||||||||| ||||||||||||||||| |||| ||||||||||    
T  19294570 ttgtccgacacggctcgtatgagtgttatacaggtgtcggacaccg 19294615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 14494262 - 14494170
Alignment:
Q  144 cgacacgtgtcatacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||||||||| |||  | ||||||| ||||| |||| ||||| ||||||||| |||  ||| || || |||||| |||||||||||||||||    
T  14494262 cgacacgtgtcgtacgggtgtcataggagtgtcggacctcgacgcgtgtcggataccgtgacacgtctagtcctagaggtgtccgtgcttcat 14494170  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 17261920 - 17261992
Alignment:
Q  139 ttgtccgacacgtgtcatacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcct 211  Q
    ||||| |||||||||| ||| || ||| ||| |||||||||||  ||| |||||||||||||||||| |||||    
T  17261920 ttgtcggacacgtgtcgtacgagtgtcgtaggagtgttggacaatgacgcgtgtcggacaccacgacacgcct 17261992  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 34011128 - 34011084
Alignment:
Q  28 ttgtccgacacgtctcgtatgagtgttatataggtatcggacacc 72  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||    
T  34011128 ttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 34011084  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 34013722 - 34013766
Alignment:
Q  28 ttgtccgacacgtctcgtatgagtgttatataggtatcggacacc 72  Q
    ||||| |||||| |||||||||||||||||||||| |||||||||    
T  34013722 ttgtctgacacggctcgtatgagtgttatataggtgtcggacacc 34013766  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 57236 - 57272
Alignment:
Q  26 agttgtccgacacgtctcgtatgagtgttatataggt 62  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  57236 agttgtccgacacggctcgtatgagtgttacataggt 57272  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 40838137 - 40838193
Alignment:
Q  23 ctgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaa 79  Q
    ||||||||||||||||| || ||||||||||||||||| | ||||||||||||||||    
T  40838137 ctgagttgtccgacacgacttgtatgagtgttatatagatgtcggacaccggtccaa 40838193  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 38989178 - 38989146
Alignment:
Q  28 ttgtccgacacgtctcgtatgagtgttatatag 60  Q
    |||||||||||| ||||||||||||||||||||    
T  38989178 ttgtccgacacggctcgtatgagtgttatatag 38989146  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 32200666 - 32200612
Alignment:
Q  182 tcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||    
T  32200666 tcgacacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcat 32200612  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 17651600 - 17651680
Alignment:
Q  156 tacaagggtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    |||||| ||||||  ||||| |||||  ||| ||||||||||||| |||| |||||  |||||||||||||||||||||||    
T  17651600 tacaagtgtcataagagtgtcggacactgacgcgtgtcggacaccgcgacacgcctaatcctaaaggtgtccgtgcttcat 17651680  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 41849235 - 41849291
Alignment:
Q  24 tgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaag 80  Q
    |||||||||||||||| ||| ||| |||||||||||||| ||||||||| |||||||    
T  41849235 tgagttgtccgacacgcctcatataagtgttatataggtgtcggacaccagtccaag 41849291  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 4747865 - 4747819
Alignment:
Q  190 tgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||||    
T  4747865 tgtcggacaccacgacacgcctagtcctagaggtgtccgtgcttcat 4747819  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 17651490 - 17651560
Alignment:
Q  26 agttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaagaactgttgaagtaaag 96  Q
    |||||||||||||| ||| ||| ||||||||||| || ||||||||||||| ||| | ||| |||||||||    
T  17651490 agttgtccgacacgcctcatataagtgttatataagtgtcggacaccggtcaaaggagtgtcgaagtaaag 17651560  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 26576300 - 26576338
Alignment:
Q  24 tgagttgtccgacacgtctcgtatgagtgttatataggt 62  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  26576300 tgagttgtccgacacggctcgtatgagtgttatataggt 26576338  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 32200767 - 32200728
Alignment:
Q  23 ctgagttgtccgacacgtctcgtatgagtgttatataggt 62  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  32200767 ctgagttgtccgacacggctcgtatgactgttatataggt 32200728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 4748004 - 4747934
Alignment:
Q  26 agttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaagaactgttgaagtaaag 96  Q
    |||||||||| | | |||||||||||||||||||||| |||||||  ||| ||| || ||| |||||||||    
T  4748004 agttgtccgagatggctcgtatgagtgttatataggtgtcggacattggtgcaataagtgtcgaagtaaag 4747934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 34409507 - 34409458
Alignment:
Q  24 tgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    |||||||| | ||||  |||||||||||||||||||||| ||||||||||    
T  34409507 tgagttgttcaacacaactcgtatgagtgttatataggtgtcggacaccg 34409458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 41849345 - 41849418
Alignment:
Q  163 gtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||||| ||||| ||||| |||| |||||| |||||| |||| |||||  | ||| |||||||||||||||||    
T  41849345 gtcataggagtgtcggacaccgacgcgtgtctgacaccgcgacacgcctaattctagaggtgtccgtgcttcat 41849418  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 9929890 - 9929938
Alignment:
Q  25 gagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    |||||||  |||||| || ||||||||||||||||||| ||||||||||    
T  9929890 gagttgtttgacacggctggtatgagtgttatataggtgtcggacaccg 9929938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 45215950 - 45215897
Alignment:
Q  20 tgactgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    |||||| ||||||||||||| ||||||||||||||| |||||| ||||||||||    
T  45215950 tgactgggttgtccgacacggctcgtatgagtgttacataggtgtcggacaccg 45215897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 10678527 - 10678599
Alignment:
Q  23 ctgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggtccaagaactgttgaagtaaa 95  Q
    |||||||||| ||||||  ||||||||||||||||||||| ||||||||| |||| || | ||||||| ||||    
T  10678527 ctgagttgtcagacacggttcgtatgagtgttatataggtgtcggacaccagtcctaggagtgttgaattaaa 10678599  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 27994160 - 27994207
Alignment:
Q  49 agtgttatataggtatcggacaccggtccaagaactgttgaagtaaag 96  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||    
T  27994160 agtgttatataggtatcagacaccggtccaaaaagtgttgaagtaaag 27994207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 27616550 - 27616600
Alignment:
Q  23 ctgagttgtccgacacgtctcgtatgagtgttatataggtatcggacaccg 73  Q
    ||||||||||||||||| || |||||||||| ||||||||  |||||||||    
T  27616550 ctgagttgtccgacacggcttgtatgagtgtcatataggtgccggacaccg 27616600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 22291166 - 22291239
Alignment:
Q  163 gtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 236  Q
    ||||||| ||||| ||||| |||| ||||||||||||  ||||  |||| |||||| |||| ||||||||||||    
T  22291166 gtcataggagtgtcggacaccgacgcgtgtcggacactgcgacatgcctagtcctagaggtttccgtgcttcat 22291239  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 75
Target Start/End: Original strand, 289060 - 289109
Alignment:
Q  26 agttgtccgacacgtctcgtatgagtgttatataggtatcggacaccggt 75  Q
    ||||||| || | |||||||||||||||||||||||| ||||||||||||    
T  289060 agttgtctgatatgtctcgtatgagtgttatataggtgtcggacaccggt 289109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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