View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_high_27 (Length: 305)
Name: NF11006_high_27
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_high_27 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 6 - 290
Target Start/End: Complemental strand, 44635686 - 44635387
Alignment:
| Q |
6 |
aggagcagagaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtt |
105 |
Q |
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| T |
44635686 |
aggagcagtgaaacaagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtt |
44635587 |
T |
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| Q |
106 |
tattcacaacttgacattgaaattgctcaattaaaaagag---------------gtaataatattgaagagaaagaaagtttgccaaatcctttacaag |
190 |
Q |
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| T |
44635586 |
tattcacaacttgacattgaaattgctcaattaaaaagagacaatattgaaagaggtaataatattgaagagaaagaaagtttgccaaatcctttacaag |
44635487 |
T |
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| Q |
191 |
cagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttcattaaagattataaggtaagggtaggtgttgtttt |
290 |
Q |
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| T |
44635486 |
cagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttcattaaagattataaggtaagggtaggtgttgtttt |
44635387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 12281790 - 12281922
Alignment:
| Q |
156 |
tgaagagaaagaaagtttgccaaatcctttacaagcagcagcagcttcagctttagcattttcaattggtgcaatggtgccactacttgcagcatctttc |
255 |
Q |
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| T |
12281790 |
tgaagagaaagaaagtttacctaatcctctacaagctgcagctgcatcagctttagctttttctattggtgcaatggtgccattacttgcagcttttttt |
12281889 |
T |
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| Q |
256 |
attaaagattataaggtaagggtaggtgttgtt |
288 |
Q |
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| T |
12281890 |
ataagggattataaggtgagagttggtgttgtt |
12281922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 12281632 - 12281758
Alignment:
| Q |
19 |
caagacataaaagccatgatcttgtcaggttttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttg |
118 |
Q |
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| T |
12281632 |
caagacatcaaagcaatgatcttaaccggttttgccgggttggtagccggtgcatgcagcatggcaataggtgaatttgtctctgtgtactcacaattag |
12281731 |
T |
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| Q |
119 |
acattgaaattgctcaattaaaaagag |
145 |
Q |
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| T |
12281732 |
acattgaagttgctcaaatgaaaagag |
12281758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 13550 - 13456
Alignment:
| Q |
50 |
ttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaaga |
144 |
Q |
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| T |
13550 |
ttgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaaatgaaaaga |
13456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 19230 - 19136
Alignment:
| Q |
50 |
ttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaaga |
144 |
Q |
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| T |
19230 |
ttgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaaatgaaaaga |
19136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 1293044 - 1293138
Alignment:
| Q |
50 |
ttgctggacttgtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaaga |
144 |
Q |
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| T |
1293044 |
ttgctggtcttgtagctggtgcatgtagcatggcaattggtgaatttgtgtctgtctattcacaatatgatattgaatttgcacaaatgaaaaga |
1293138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 37742354 - 37742438
Alignment:
| Q |
61 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
145 |
Q |
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| T |
37742354 |
gtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag |
37742438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 37749424 - 37749508
Alignment:
| Q |
61 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
145 |
Q |
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| T |
37749424 |
gtagctggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag |
37749508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 37752364 - 37752280
Alignment:
| Q |
61 |
gtagctggtgcatgtagcatggcaataggtgagtttgtatctgtttattcacaacttgacattgaaattgctcaattaaaaagag |
145 |
Q |
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| T |
37752364 |
gtagcaggtgcttgtagcatggcaattggtgagtttgtttctgtttatactcaatatgacattgagatagctcagataaaaagag |
37752280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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