View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_high_29 (Length: 300)
Name: NF11006_high_29
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 11949208 - 11949457
Alignment:
| Q |
18 |
aaattagacagcaatctctctctaatcatggaaaattttcacctttaggatcaccacttttagctacggtttgatttgagatctttgtcaggagaacata |
117 |
Q |
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| T |
11949208 |
aaattagacagcaatctctctctcatcatggaaaaatttcacctttaggatcaccacttttagctacggtt-gatttgagatctttgttaggagaacata |
11949306 |
T |
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| Q |
118 |
tctgatgatacagaacacaagcataaggatcatcgaaaaaagtacacannnnnnnaggaaatttatttgttgattatatttctgctctcatatatatttt |
217 |
Q |
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| T |
11949307 |
tctgatgatacagaacacaagcataaggatcatcgaaaaaagtacacatttttttaggaaatttatttgttgattatatttctgctctcatatatatttt |
11949406 |
T |
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| Q |
218 |
caagtcatatttatagactatagtgtaacatttattcttgattaatttgtt |
268 |
Q |
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| T |
11949407 |
caagtcatatttatagactatagtgtaacatgtattcttgattaatttgtt |
11949457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 11952335 - 11952395
Alignment:
| Q |
24 |
gacagcaatctctctctaatcatggaaaattttcacctttaggatcaccacttttagctac |
84 |
Q |
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| T |
11952335 |
gacaacaatcttgctctcatcatggaagaatttcacctttagaatcaccacttttagctac |
11952395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 11952839 - 11952871
Alignment:
| Q |
184 |
ttgttgattatatttctgctctcatatatattt |
216 |
Q |
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| T |
11952839 |
ttgttgattttatttctgctctcatatatattt |
11952871 |
T |
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