View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11006_high_36 (Length: 238)

Name: NF11006_high_36
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11006_high_36
NF11006_high_36
[»] chr1 (16 HSPs)
chr1 (1-216)||(3701458-3701673)
chr1 (1-109)||(3697505-3697613)
chr1 (124-209)||(17414535-17414620)
chr1 (119-183)||(28574444-28574508)
chr1 (119-183)||(28598456-28598520)
chr1 (119-178)||(3468215-3468274)
chr1 (119-184)||(21431674-21431739)
chr1 (131-189)||(13654468-13654526)
chr1 (124-189)||(10186568-10186633)
chr1 (124-189)||(16051337-16051402)
chr1 (119-178)||(43358890-43358949)
chr1 (124-189)||(19310965-19311030)
chr1 (136-209)||(10185832-10185905)
chr1 (124-189)||(44524018-44524085)
chr1 (177-211)||(1188054-1188088)
chr1 (124-182)||(35653247-35653305)
[»] chr5 (9 HSPs)
chr5 (124-212)||(4555772-4555860)
chr5 (119-189)||(13556291-13556361)
chr5 (114-183)||(39909100-39909169)
chr5 (119-187)||(2023101-2023169)
chr5 (119-183)||(9872417-9872481)
chr5 (119-183)||(9877532-9877596)
chr5 (124-182)||(35368895-35368953)
chr5 (114-183)||(39903987-39904056)
chr5 (124-177)||(43540779-43540832)
[»] chr3 (23 HSPs)
chr3 (127-212)||(20891182-20891267)
chr3 (113-183)||(10584851-10584921)
chr3 (119-183)||(4049955-4050019)
chr3 (119-182)||(49784633-49784696)
chr3 (113-183)||(10591288-10591358)
chr3 (113-183)||(10672931-10673001)
chr3 (119-183)||(1302237-1302301)
chr3 (119-183)||(4055089-4055153)
chr3 (119-183)||(5458004-5458068)
chr3 (119-183)||(5481481-5481545)
chr3 (119-183)||(6852945-6853009)
chr3 (119-183)||(6858048-6858112)
chr3 (119-183)||(8464897-8464961)
chr3 (128-212)||(18024144-18024228)
chr3 (119-183)||(33702592-33702656)
chr3 (119-178)||(33703447-33703506)
chr3 (130-183)||(8458470-8458523)
chr3 (119-183)||(31076395-31076459)
chr3 (119-183)||(31081500-31081564)
chr3 (113-188)||(10678039-10678116)
chr3 (141-212)||(18023536-18023606)
chr3 (118-189)||(29827550-29827620)
chr3 (180-212)||(20891382-20891414)
[»] scaffold0223 (1 HSPs)
scaffold0223 (119-183)||(2012-2076)
[»] chr8 (10 HSPs)
chr8 (119-183)||(14314904-14314968)
chr8 (119-183)||(14318608-14318672)
chr8 (119-183)||(18494169-18494233)
chr8 (119-183)||(26986982-26987046)
chr8 (119-183)||(34108378-34108442)
chr8 (119-178)||(43956848-43956907)
chr8 (119-183)||(26981868-26981932)
chr8 (119-183)||(10340960-10341024)
chr8 (141-189)||(25953162-25953210)
chr8 (124-184)||(18608642-18608701)
[»] chr7 (10 HSPs)
chr7 (119-183)||(12851823-12851887)
chr7 (119-183)||(12856936-12857000)
chr7 (124-189)||(4181390-4181455)
chr7 (119-183)||(26051168-26051232)
chr7 (119-183)||(26056281-26056345)
chr7 (119-183)||(26060527-26060591)
chr7 (119-183)||(26065640-26065704)
chr7 (126-189)||(5440287-5440350)
chr7 (126-189)||(5449297-5449360)
chr7 (124-182)||(37459857-37459915)
[»] chr2 (7 HSPs)
chr2 (118-182)||(20892343-20892407)
chr2 (119-181)||(14917377-14917439)
chr2 (119-183)||(17720519-17720583)
chr2 (119-183)||(45120534-45120598)
chr2 (119-189)||(42780320-42780390)
chr2 (114-184)||(30283442-30283512)
chr2 (124-181)||(716406-716463)
[»] chr6 (6 HSPs)
chr6 (116-189)||(21936673-21936746)
chr6 (116-189)||(24509844-24509917)
chr6 (119-183)||(21275920-21275984)
chr6 (116-189)||(21937710-21937783)
chr6 (124-182)||(20752132-20752190)
chr6 (177-211)||(21937809-21937843)
[»] chr4 (13 HSPs)
chr4 (119-183)||(35091062-35091126)
chr4 (119-183)||(35096175-35096239)
chr4 (124-182)||(3409602-3409660)
chr4 (124-184)||(3424702-3424762)
chr4 (124-184)||(54859170-54859230)
chr4 (119-189)||(32429280-32429350)
chr4 (118-189)||(30019834-30019905)
chr4 (128-182)||(34128254-34128308)
chr4 (124-182)||(34279507-34279565)
chr4 (124-179)||(22118857-22118912)
chr4 (127-189)||(18670985-18671047)
chr4 (124-189)||(14643732-14643797)
chr4 (178-211)||(34279440-34279473)
[»] scaffold0006 (1 HSPs)
scaffold0006 (131-189)||(144229-144287)
[»] scaffold0005 (1 HSPs)
scaffold0005 (124-189)||(173495-173560)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 3701673 - 3701458
Alignment:
Q  1 gtgttgtttggattgttcatctggtcaaatgaattttgacgtaaggtataaacgtatgaaagtgattctgggtctgcaaaagtcccaagtttcataaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3701673 gtgttgtttggattgttcatctggtcaaatgaattttgacgtaaggtataaacgtatgaaagtgattctgggtctgcaaaagtcccaagtttcataaata 3701574  T
Q  101 ttagaaaattcgattttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgccaaaggttat 200  Q
     ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3701573 ctagaaaattcgattttaaactcaggcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgccaaaggttat 3701474  T
Q  201 gatcatatacataaga 216  Q
    ||||||||||||||||    
T  3701473 gatcatatacataaga 3701458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 3697613 - 3697505
Alignment:
Q  1 gtgttgtttggattgttcatctggtcaaatgaattttgacgtaaggtataaacgtatgaaagtgattctgggtctgcaaaagtcccaagtttcataaata 100  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  3697613 gtgttgtttggatcgttcatctggtcaaatgaattttgaagtaaggtataaacgtatgaaagtgattctgggtctgcaaaagttgggagtttcataaata 3697514  T
Q  101 ttagaaaat 109  Q
     || |||||    
T  3697513 ctaaaaaat 3697505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 17414620 - 17414535
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgccaaaggttatgatcatata 209  Q
    ||||||||||| |||| |||||||||||||||| ||||  ||||||||||||||| ||||| ||||||||||||||||||||||||    
T  17414620 atgcccaaatgccaagcatttatagtgcattatatgaccattcacatgagagaaaccacccatttgccaaaggttatgatcatata 17414535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 28574444 - 28574508
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  28574444 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 28574508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 28598456 - 28598520
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  28598456 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 28598520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 3468215 - 3468274
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaa 178  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  3468215 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 3468274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 21431739 - 21431674
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 184  Q
    |||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||| |||||    
T  21431739 aactaatgcccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaagcaccc 21431674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 13654468 - 13654526
Alignment:
Q  131 aatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  13654468 aatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctttg 13654526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 10186633 - 10186568
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||||||||||||||  |||||||||||||||| |||| |||||||||||||||| ||||| ||||    
T  10186633 atgcccaaatgtcaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttg 10186568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 16051337 - 16051402
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||||||||||||||  |||||||||||||||| ||||  |||||||||| |||||||||||||||    
T  16051337 atgcccaaatgtcaaacatttatagtgcattatatgaccattcacatgagtgaaaacacccttttg 16051402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 43358890 - 43358949
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaa 178  Q
    |||| ||||||||||| |||| ||||||||||||||||  ||||||||||||||||||||    
T  43358890 aactaatgcccaaatgccaagcatttatagtgcattataggactcttcacatgagagaaa 43358949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 19310965 - 19311030
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||||||||||||||  |||||||||||||||  |||| |||||||||||||||| ||||| ||||    
T  19310965 atgcccaaatgtcaaacatttatagtgcattacatgacccttcacatgagagaaagcacccctttg 19311030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 10185832 - 10185905
Alignment:
Q  136 caagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgccaaaggttatgatcatata 209  Q
    |||| |||||||||||||||| ||||  |||| |||||||||| | ||| || ||||| |||||||||||||||    
T  10185832 caagcatttatagtgcattatatgaccattcatatgagagaaagcgcccattagccaagggttatgatcatata 10185905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 44524085 - 44524018
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcac--atgagagaaaacacccttttg 189  Q
    |||||||||||||||  |||||||||||||||| |||| ||||||  ||||| |||||||||| ||||    
T  44524085 atgcccaaatgtcaaacatttatagtgcattatatgacccttcacatatgagggaaaacacccatttg 44524018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 1188054 - 1188088
Alignment:
Q  177 aaacacccttttgccaaaggttatgatcatataca 211  Q
    |||||||| ||||||||||||||||||||||||||    
T  1188054 aaacacccatttgccaaaggttatgatcatataca 1188088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 35653305 - 35653247
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 182  Q
    ||||||||||||||||| ||||||  ||  ||| |||| ||||||||||||||||||||    
T  35653305 atgcccaaatgtcaagtgtttataaggctatatatgacccttcacatgagagaaaacac 35653247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 4555772 - 4555860
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgccaaaggttatgatcatatacat 212  Q
    |||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||| || |||||||||||||||| |||||||    
T  4555772 atgcccaaatgtcaagcatttatagtgcattatatgactattaacatgagagaaaacaccccttagccaaaggttatgatcgtatacat 4555860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 13556361 - 13556291
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||    
T  13556361 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacccatttg 13556291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 39909100 - 39909169
Alignment:
Q  114 ttttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  39909100 ttttcaactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 39909169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 2023101 - 2023169
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttt 187  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  2023101 aactaatgcccatatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacccttt 2023169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 9872481 - 9872417
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  9872481 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 9872417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 9877596 - 9877532
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  9877596 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 9877532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 35368953 - 35368895
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 182  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||    
T  35368953 atgcccaaatgtcaagcatttatagtgcattatatgacttttcacatgagagaaaacac 35368895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 39903987 - 39904056
Alignment:
Q  114 ttttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  39903987 ttttcaactaatgccaaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 39904056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 43540832 - 43540779
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaa 177  Q
    ||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||    
T  43540832 atgcccagatgccaagtatttatagtgcattatatgacccttcacatgagagaa 43540779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 212
Target Start/End: Original strand, 20891182 - 20891267
Alignment:
Q  127 cccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgccaaaggttatgatcatatacat 212  Q
    |||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  20891182 cccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccctttgccaaatgttaggatcatatacat 20891267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 10584921 - 10584851
Alignment:
Q  113 attttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    ||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  10584921 attttcaactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 10584851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 4049955 - 4050019
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4049955 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 4050019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 49784633 - 49784696
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 182  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  49784633 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacac 49784696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 10591358 - 10591288
Alignment:
Q  113 attttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    ||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  10591358 attttcaactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 10591288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 10673001 - 10672931
Alignment:
Q  113 attttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    ||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  10673001 attttcaactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 10672931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 1302301 - 1302237
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  1302301 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 1302237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 4055089 - 4055153
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  4055089 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 4055153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 5458068 - 5458004
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  5458068 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 5458004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 5481545 - 5481481
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  5481545 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 5481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 6853009 - 6852945
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  6853009 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 6852945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 6858112 - 6858048
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  6858112 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaatcacc 6858048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 8464897 - 8464961
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  8464897 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 8464961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 18024228 - 18024144
Alignment:
Q  128 ccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttgccaaaggttatgatcatatacat 212  Q
    |||||||||||| |||||||||||||||| |||| |||||||||||||||||||||  ||| | ||||||||| || ||||||||    
T  18024228 ccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaaacacctctttactaaaggttattataatatacat 18024144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 33702656 - 33702592
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  33702656 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 33702592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 33703447 - 33703506
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaa 178  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  33703447 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 33703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 8458470 - 8458523
Alignment:
Q  130 aaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  8458470 aaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 8458523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 31076459 - 31076395
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  31076459 aactaatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacc 31076395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 31081564 - 31081500
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| ||||    
T  31081564 aactaatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacc 31081500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 188
Target Start/End: Complemental strand, 10678116 - 10678039
Alignment:
Q  113 attttaaactcatgcccaaatgtcaagtatttatagtgcat--tatgtgactcttcacatgagagaaaacaccctttt 188  Q
    ||||| |||| |||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||| |||| ||||    
T  10678116 attttcaactaatgcccaaatgtcaagcatttatagtgcattatatgtgactcttcacatgaaagaaagcaccttttt 10678039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 18023606 - 18023536
Alignment:
Q  141 atttatagtgcattatgtgactcttcacatgagagaaaacacccttttgccaaaggttatgatcatatacat 212  Q
    ||||||| || ||||| |||| |||||||||||||||||||||  ||| ||||| |||||||||||||||||    
T  18023606 atttataatgtattatatgac-cttcacatgagagaaaacacctcttttccaaaagttatgatcatatacat 18023536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 189
Target Start/End: Original strand, 29827550 - 29827620
Alignment:
Q  118 aaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    ||||| ||||||||||| |||| ||||||| |||||||| ||||| ||||||||| ||||||||||| ||||    
T  29827550 aaactaatgcccaaatgccaagcatttataatgcattatatgact-ttcacatgatagaaaacacccctttg 29827620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 212
Target Start/End: Original strand, 20891382 - 20891414
Alignment:
Q  180 cacccttttgccaaaggttatgatcatatacat 212  Q
    |||||||||||||||||||||| ||||||||||    
T  20891382 cacccttttgccaaaggttatggtcatatacat 20891414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 2076 - 2012
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  2076 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 2012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 14314968 - 14314904
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  14314968 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 14314904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 14318672 - 14318608
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  14318672 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacc 14318608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 18494233 - 18494169
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  18494233 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 18494169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 26987046 - 26986982
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26987046 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 34108378 - 34108442
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  34108378 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 34108442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 43956907 - 43956848
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaa 178  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  43956907 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 43956848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 26981932 - 26981868
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||    
T  26981932 aactaatgcccaaatgtcaaacatttatagtgcattatatgactcttcacatgagagaaagcacc 26981868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 10341024 - 10340960
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| ||||||||||| |||| |||||| ||||||||| ||||||||||||||||| ||| ||||    
T  10341024 aactaatgcccaaatgccaagcatttatggtgcattatatgactcttcacatgagaaaaagcacc 10340960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 25953210 - 25953162
Alignment:
Q  141 atttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||||||||||||||| ||||  ||||||||||||||||||||| ||||    
T  25953210 atttatagtgcattatatgaccattcacatgagagaaaacacccatttg 25953162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 18608701 - 18608642
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 184  Q
    ||||| ||||| |||  |||| ||||||||||| |||| ||||||||||||||||||||||    
T  18608701 atgcctaaatgccaaacatttgtagtgcattatatgac-cttcacatgagagaaaacaccc 18608642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 12851823 - 12851887
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  12851823 aactaatgcccaaatgtcaagtatttatagtgcattatatgactcttcacatgagagaaagcacc 12851887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 12856936 - 12857000
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  12856936 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 12857000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 4181455 - 4181390
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||||||||||||||  |||||||||||||||| |||||||||| ||||||||||||||| |||||    
T  4181455 atgcccaaatgtcaaacatttatagtgcattatatgactcttcatatgagagaaaacaccattttg 4181390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 26051168 - 26051232
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26051168 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26051232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 26056281 - 26056345
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26056281 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26056345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 26060527 - 26060591
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26060527 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26060591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 26065640 - 26065704
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  26065640 aactaatgcctaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 26065704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 5440350 - 5440287
Alignment:
Q  126 gcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    ||||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  5440350 gcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttg 5440287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 5449360 - 5449297
Alignment:
Q  126 gcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    ||||||||| |||| |||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  5449360 gcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttg 5449297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 37459915 - 37459857
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 182  Q
    ||||||||||||||||||||||||||||||||| || |  |||||||||||||||||||    
T  37459915 atgcccaaatgtcaagtatttatagtgcattatatgtccattcacatgagagaaaacac 37459857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 20892407 - 20892343
Alignment:
Q  118 aaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 182  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  20892407 aaactaatgcccaaatgtcaagtatttatagtgcattatatgactcttcacacgagagaaaacac 20892343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 14917439 - 14917377
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaaca 181  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  14917439 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaaca 14917377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 17720583 - 17720519
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  17720583 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 17720519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 45120534 - 45120598
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  45120534 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 45120598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 189
Target Start/End: Original strand, 42780320 - 42780390
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||| |||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  42780320 aactaatgcccaactgtcaatcatttatagtgcattatatgactcttcacatgagagaaaacacccctttg 42780390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 30283512 - 30283442
Alignment:
Q  114 ttttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 184  Q
    |||| |||| ||||||||||| |||  |||||||||||||||| ||||||||||||||| |||||||||||    
T  30283512 ttttcaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgaaagaaaacaccc 30283442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 716406 - 716463
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaaca 181  Q
    ||||||||||| |||  |||||||||||||||| ||||  |||| |||||||||||||    
T  716406 atgcccaaatgccaaacatttatagtgcattatatgacctttcatatgagagaaaaca 716463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 21936746 - 21936673
Alignment:
Q  116 ttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    ||||||| |||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  21936746 ttaaactaatgcccaaatgttaagcatttatagtgcattatatgacccttcacatgagagaaaacacccctttg 21936673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 24509844 - 24509917
Alignment:
Q  116 ttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||  |||||||||||||||||||||| ||||    
T  24509844 ttaaactaatgcccaaatgtcaagcatttatagtgcattatatgaaccttcacatgagagaaaacacccatttg 24509917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 21275920 - 21275984
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  21275920 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 21275984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 21937710 - 21937783
Alignment:
Q  116 ttaaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    ||||||| ||||||||||| |||  ||||||||||| |||| |||| ||||||||||||||||| |||| ||||    
T  21937710 ttaaactaatgcccaaatgccaaacatttatagtgcgttatatgacccttcacatgagagaaaatacccctttg 21937783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 20752190 - 20752132
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 182  Q
    ||||| ||||| ||||||||||||||||||||  ||||  |||||||||||||||||||    
T  20752190 atgcctaaatgccaagtatttatagtgcattagatgacctttcacatgagagaaaacac 20752132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 21937809 - 21937843
Alignment:
Q  177 aaacacccttttgccaaaggttatgatcatataca 211  Q
    |||||||||||||||||||||||||||||||||||    
T  21937809 aaacacccttttgccaaaggttatgatcatataca 21937843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 35091062 - 35091126
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  35091062 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 35091126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 35096175 - 35096239
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacc 183  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  35096175 aactaatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacc 35096239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 3409660 - 3409602
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 182  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||    
T  3409660 atgcccaaatgtcaaatatttatagtgcattatatgacccttcacatgagagaaaacac 3409602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 3424762 - 3424702
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 184  Q
    |||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||||||||    
T  3424762 atgcccaaatatcaaatatttatagtgcattatatgacccttcacatgagagaaaacaccc 3424702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 54859230 - 54859170
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacaccc 184  Q
    |||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  54859230 atgcccaaatatcaagcatttatagtgcattatatgacccttcacatgagagaaaacaccc 54859170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 32429350 - 32429280
Alignment:
Q  119 aactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||| |||| |||||| |||| |||||||||||||||| |||||||||| |||||||||||||||| ||||    
T  32429350 aactaatgcacaaatgccaagcatttatagtgcattatatgactcttcaaatgagagaaaacacccctttg 32429280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 30019905 - 30019834
Alignment:
Q  118 aaactcatgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    ||||| ||||||||||| |||  |||||||||||||||| |||| |||||||||||||||| ||||| ||||    
T  30019905 aaactaatgcccaaatgccaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttg 30019834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 34128308 - 34128254
Alignment:
Q  128 ccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 182  Q
    |||||||||||| |||||||||||||||| |||| |||||||| |||||||||||    
T  34128308 ccaaatgtcaagcatttatagtgcattatatgacccttcacattagagaaaacac 34128254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 34279565 - 34279507
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacac 182  Q
    |||| |||||||| || |||||||||||||||| |||| ||||||||||||||||||||    
T  34279565 atgctcaaatgtcgagcatttatagtgcattatatgacccttcacatgagagaaaacac 34279507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 22118857 - 22118912
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaa 179  Q
    |||||||||||||||| |||||||||  ||||| |||| |||||||||||||||||    
T  22118857 atgcccaaatgtcaagcatttatagtatattatatgacccttcacatgagagaaaa 22118912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 18670985 - 18671047
Alignment:
Q  127 cccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||||||| |||| ||||||||| |||||| |||| |||||||||||||||| ||||| ||||    
T  18670985 cccaaatgccaagcatttatagtccattatatgacccttcacatgagagaaagcacccatttg 18671047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 14643797 - 14643732
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||| ||||| ||||  |||||||| ||||||| |||| |||||||||| ||||||||||| ||||    
T  14643797 atgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttg 14643732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 34279473 - 34279440
Alignment:
Q  178 aacacccttttgccaaaggttatgatcatataca 211  Q
    ||||||||||| ||||||||||||||||||||||    
T  34279473 aacacccttttaccaaaggttatgatcatataca 34279440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 144229 - 144287
Alignment:
Q  131 aatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||||||||||| ||||    
T  144229 aatgccaagtatttatagtgcattatatgacccttcacatgagagaaaacacccctttg 144287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 173495 - 173560
Alignment:
Q  124 atgcccaaatgtcaagtatttatagtgcattatgtgactcttcacatgagagaaaacacccttttg 189  Q
    |||| ||||| ||||  |||||||| ||||||| |||| |||||||||| ||||||||||| ||||    
T  173495 atgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttg 173560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University