View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_high_39 (Length: 204)
Name: NF11006_high_39
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_high_39 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 183793 - 183623
Alignment:
| Q |
19 |
aagaatctcacagtcatgtcctatgtttccaacacttattatttgcgctcgttcaaatttcttaaagccattttcctacccaaaccatactttagtacca |
118 |
Q |
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| T |
183793 |
aagaatctcacagtcatgtcctatgtttccaacacttattatttgcgctcgttcaaatttcttaaagccattttcctacccaaaccatactttagtacca |
183694 |
T |
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| Q |
119 |
aatcaataaaattctaaaagccattttcctacccaaaacatactttagtaccaagaccaaaagagtctctg |
189 |
Q |
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| T |
183693 |
aatcaataaaattctaaaagccattttcctacccaaaacatactttagtaccaagaccaaaagagtctctg |
183623 |
T |
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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 590601 - 590689
Alignment:
| Q |
32 |
tcatgtcctatgtttccaacacttattatttgcgctcgttcaaatttcttaaagccattttcctacccaaaccatactttagtaccaaat |
121 |
Q |
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| T |
590601 |
tcatttcctaagtttccaacacttagtatttgcacccattcaaatttctaaatgcctttttcctacccaaa-catactttagtaccaaat |
590689 |
T |
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