View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11006_low_12 (Length: 463)
Name: NF11006_low_12
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_12 |
 | |
|
| [»] scaffold0449 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0449 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 2633 - 2220
Alignment:
| Q |
18 |
gacactagaacgtggccccatatggaagagtttgctgactatgaccctagtagctatatgctgagctgcaaagacctgctcgtaataagcgtgagctatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633 |
gacactagaacgtggccccatatggaagagtttgctgactatgaccctagtagctatatgctgagctgcaaagacctgctcgtaataagcgtgagctatc |
2534 |
T |
|
| Q |
118 |
ctggctcgaggctatttgatctaaataggtgcagaagcatacgcaagaagcatacgcaagagccccatgaaccatagctccattgttggccattttttag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2533 |
ctggctcgaggctatttgatctaaataggtgcagaagcatacgcaaga-------------gccccatgaaccatagctccattgttggccattttttag |
2447 |
T |
|
| Q |
218 |
cagaactgtctttggagagaaagatagttcttgaaaatttggcgctaactaacttgtttgattttctaaccgatgatgatcgtgactattcggttatgcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2446 |
cagaactgtctttggagagaaagatagttcttgaaaatttggcgctaactaacttgtttgattttctaaccgataatgatcgtgactattcggttatgcg |
2347 |
T |
|
| Q |
318 |
ttcgttaattgcagctttacactatttataaattggataacgaacgtggatactaatgtttattttgttattatgaaatggatttcatttgatatttttg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2346 |
ttcgttaattgcagctttacactatttataaattggataacgaacgtggatactaatgcttattttgttattatgaaatggatttcatttgatatttttg |
2247 |
T |
|
| Q |
418 |
tacactaatggtttatataaattaaat |
444 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2246 |
tacactaatggtttatataaattaaat |
2220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 11086583 - 11086357
Alignment:
| Q |
18 |
gacactagaacgtggccccatatggaagagtttgctgactatgaccctagtagctatatgctgagctgcaaagacctgctcgtaataagcgtgagctatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| | ||||||||||||| ||| ||||||||||| ||||||||||||||||| | || ||| |
|
|
| T |
11086583 |
gacactagaacgtggccccatatggaagagttcgctgatggtaaccctagtagctacatgatgagctgcaaaaacctgctcgtaataagcacgggcaatc |
11086484 |
T |
|
| Q |
118 |
ctggctcgaggctatttgatctaaataggtgcagaagcatacgcaagaagcatacgcaagagccccatgaaccatagctccattgttggccattttttag |
217 |
Q |
| |
|
|| |||||||| |||| |||| ||||||||||||||| |||| |||||||||| ||||||||| |||||||||||| ||||||||||| |
|
|
| T |
11086483 |
ctagctcgaggatattggatcaaaataggtgcagaag-------------cataagcaagagccctatgaaccatggctccattgttgaccattttttag |
11086397 |
T |
|
| Q |
218 |
cagaa-ctgtctttggagagaaagatagttcttgaaaatt |
256 |
Q |
| |
|
||||| | ||||| ||||||||||| ||||||||||||| |
|
|
| T |
11086396 |
cagaaccaatctttagagagaaagatggttcttgaaaatt |
11086357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University