View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_13 (Length: 461)
Name: NF11006_low_13
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 10 - 442
Target Start/End: Original strand, 3697914 - 3698346
Alignment:
| Q |
10 |
agaagcagagaaagttagaaggagaaaaacaaggaacatgtcaaattctgtggctattgctgctacatgtagtgaaaattttgaagcaaatagtgaaggt |
109 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3697914 |
agaatcagagaaagttagaaggagaaaaacaagaaacatgtcaaattctgtagctattgctgctacatgcagtgaaaattttgaagcaaatagtgaaggt |
3698013 |
T |
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| Q |
110 |
gttaatgttaatgatgttaacagtggtaaatctaatggtggtggttcacagagaaggctttgggtgaaggatcgttcaggagcatggtgggatgaatgta |
209 |
Q |
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| T |
3698014 |
gttaatgttaatgatgttaacagtggtaaatctaatggtggtggttcacagagaaggctttgggtgaaggatcgttcaggagcatggtgggatgaatgta |
3698113 |
T |
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| Q |
210 |
acaaagaagattttcctgaagatgagtttaagaaagcatttagaatgggaaaatcaacttttgatttgatttgtgaagaactgaattcagcaattgtgaa |
309 |
Q |
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| T |
3698114 |
acaaagaagattttcctgaagatgagtttaagaaagcatttagaatgggaaaatcaacttttgatttgatttgtgaagaattgaattcagcaattgtgaa |
3698213 |
T |
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| Q |
310 |
agaagatacaactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagattagcaacaggtgatcctcttagaattgtttcaaaa |
409 |
Q |
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| T |
3698214 |
agaagatacaactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagattagcaacaggtgatcctcttagaattgtttcaaaa |
3698313 |
T |
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| Q |
410 |
aggtttggtttaggtatatcaacttgtcataaa |
442 |
Q |
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| T |
3698314 |
aggtttggtttaggtatatcaacttgtcataaa |
3698346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 119 - 442
Target Start/End: Original strand, 3701711 - 3702034
Alignment:
| Q |
119 |
aatgatgttaacagtggtaaatctaatggtggtggttcacagagaaggctttgggtgaaggatcgttcaggagcatggtgggatgaatgtaacaaagaag |
218 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||| |
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| T |
3701711 |
aatgatgttaacagtggtatatctaatggtggtggttcacagagaaggctatgggtgaaggatcgttccggggcatggtgggatgaatgtaataaagaag |
3701810 |
T |
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| Q |
219 |
attttcctgaagatgagtttaagaaagcatttagaatgggaaaatcaacttttgatttgatttgtgaagaactgaattcagcaattgtgaaagaagatac |
318 |
Q |
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| T |
3701811 |
attttcctgaagatgagtttaagaaagcttttagaatgggaaaatcaacttttgattttatttgtgaaaaattgaattcagcaattgtgaaagaagatac |
3701910 |
T |
|
| Q |
319 |
aactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagattagcaacaggtgatcctcttagaattgtttcaaaaaggtttggt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3701911 |
aactttgagaactgcaattccagtgagacaaagagtagctgtttgtctatggagattagcaacaggtgatcctcttagcattgtttcaaaaaggtttggt |
3702010 |
T |
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| Q |
419 |
ttaggtatatcaacttgtcataaa |
442 |
Q |
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|||||||||||||||||||||||| |
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| T |
3702011 |
ttaggtatatcaacttgtcataaa |
3702034 |
T |
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