View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11006_low_17 (Length: 387)

Name: NF11006_low_17
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11006_low_17
NF11006_low_17
[»] chr3 (25 HSPs)
chr3 (19-355)||(28981817-28982153)
chr3 (265-355)||(40831926-40832016)
chr3 (270-355)||(29530561-29530646)
chr3 (291-355)||(19368941-19369005)
chr3 (128-223)||(20142874-20142967)
chr3 (128-223)||(23270230-23270323)
chr3 (270-355)||(11602164-11602249)
chr3 (276-340)||(35855212-35855276)
chr3 (291-338)||(18682512-18682559)
chr3 (268-355)||(26102150-26102237)
chr3 (270-339)||(8528119-8528188)
chr3 (291-352)||(11955528-11955589)
chr3 (291-338)||(8393586-8393633)
chr3 (291-355)||(22519212-22519276)
chr3 (302-340)||(22473678-22473716)
chr3 (214-259)||(28979581-28979625)
chr3 (291-355)||(19895645-19895709)
chr3 (38-90)||(20143279-20143333)
chr3 (51-90)||(23269874-23269913)
chr3 (293-355)||(26777850-26777912)
chr3 (291-355)||(55297343-55297407)
chr3 (291-338)||(4139364-4139411)
chr3 (301-339)||(15321259-15321297)
chr3 (299-348)||(2847341-2847390)
chr3 (291-355)||(53800522-53800586)
[»] chr8 (20 HSPs)
chr8 (265-355)||(40616094-40616184)
chr8 (270-355)||(36776406-36776491)
chr8 (270-355)||(45434992-45435077)
chr8 (291-355)||(41972979-41973043)
chr8 (270-355)||(24053916-24054001)
chr8 (277-352)||(40587695-40587770)
chr8 (282-355)||(44389005-44389078)
chr8 (291-352)||(8760724-8760785)
chr8 (291-352)||(25836268-25836329)
chr8 (291-355)||(25346057-25346121)
chr8 (291-352)||(1942812-1942873)
chr8 (276-355)||(9472160-9472238)
chr8 (291-349)||(8162781-8162839)
chr8 (291-352)||(32844172-32844233)
chr8 (291-355)||(42245732-42245796)
chr8 (270-305)||(525863-525898)
chr8 (290-338)||(25620731-25620779)
chr8 (291-355)||(41534248-41534312)
chr8 (291-338)||(18378819-18378866)
chr8 (291-355)||(7389221-7389285)
[»] chr4 (32 HSPs)
chr4 (265-355)||(13171622-13171712)
chr4 (270-355)||(50119957-50120042)
chr4 (276-355)||(16895993-16896072)
chr4 (270-354)||(51347490-51347574)
chr4 (270-355)||(3757728-3757813)
chr4 (270-355)||(20588564-20588649)
chr4 (294-355)||(30529278-30529339)
chr4 (291-355)||(3821198-3821262)
chr4 (276-355)||(24547339-24547418)
chr4 (291-352)||(8956939-8957000)
chr4 (291-352)||(8986911-8986972)
chr4 (270-355)||(17730435-17730520)
chr4 (270-355)||(36743201-36743286)
chr4 (291-352)||(37349809-37349870)
chr4 (291-338)||(5752474-5752521)
chr4 (291-340)||(29712393-29712442)
chr4 (291-349)||(9888895-9888953)
chr4 (302-352)||(53991554-53991604)
chr4 (291-352)||(24948289-24948350)
chr4 (291-352)||(39406234-39406295)
chr4 (291-338)||(39716734-39716781)
chr4 (302-352)||(578607-578657)
chr4 (301-355)||(15704144-15704198)
chr4 (302-340)||(35716313-35716351)
chr4 (270-352)||(43021894-43021976)
chr4 (291-348)||(35833420-35833477)
chr4 (295-355)||(35498532-35498592)
chr4 (291-338)||(12682772-12682819)
chr4 (299-352)||(50033712-50033764)
chr4 (291-355)||(46104202-46104266)
chr4 (291-322)||(47560251-47560282)
chr4 (291-338)||(52799048-52799095)
[»] chr1 (24 HSPs)
chr1 (268-355)||(46626324-46626411)
chr1 (270-355)||(19322344-19322429)
chr1 (270-355)||(19400733-19400818)
chr1 (270-352)||(38894757-38894839)
chr1 (265-355)||(51971272-51971361)
chr1 (291-352)||(33075659-33075720)
chr1 (291-352)||(22198910-22198971)
chr1 (286-355)||(50557845-50557913)
chr1 (291-355)||(16300412-16300476)
chr1 (291-355)||(47134727-47134791)
chr1 (291-352)||(29844884-29844945)
chr1 (291-349)||(28570748-28570806)
chr1 (291-340)||(1826816-1826865)
chr1 (294-355)||(52306095-52306156)
chr1 (291-338)||(1367314-1367361)
chr1 (302-352)||(10766220-10766270)
chr1 (265-339)||(43116045-43116119)
chr1 (291-352)||(42678397-42678458)
chr1 (298-338)||(17364620-17364660)
chr1 (291-338)||(4890121-4890168)
chr1 (291-338)||(29188317-29188364)
chr1 (291-338)||(33359723-33359770)
chr1 (291-355)||(5426239-5426303)
chr1 (301-338)||(10698135-10698172)
[»] chr5 (17 HSPs)
chr5 (270-355)||(36886968-36887053)
chr5 (284-354)||(12422345-12422415)
chr5 (270-355)||(17643385-17643470)
chr5 (291-355)||(30754432-30754496)
chr5 (291-352)||(6305452-6305513)
chr5 (291-352)||(43138549-43138610)
chr5 (291-355)||(3088031-3088095)
chr5 (291-349)||(754450-754508)
chr5 (304-354)||(42977833-42977883)
chr5 (291-352)||(12592471-12592532)
chr5 (291-355)||(33709813-33709877)
chr5 (291-338)||(25698734-25698781)
chr5 (291-355)||(30140525-30140589)
chr5 (291-338)||(41689298-41689345)
chr5 (304-338)||(34715632-34715666)
chr5 (299-339)||(12706087-12706127)
chr5 (291-327)||(26602196-26602232)
[»] chr2 (14 HSPs)
chr2 (291-355)||(19486212-19486276)
chr2 (291-352)||(17836990-17837051)
chr2 (291-352)||(32677186-32677247)
chr2 (270-355)||(10876571-10876654)
chr2 (291-352)||(9920912-9920973)
chr2 (298-355)||(19486111-19486168)
chr2 (277-355)||(42781020-42781098)
chr2 (291-355)||(10050189-10050253)
chr2 (291-355)||(28607244-28607308)
chr2 (291-338)||(2952780-2952827)
chr2 (291-338)||(9545792-9545839)
chr2 (291-335)||(18096514-18096558)
chr2 (291-355)||(24520889-24520953)
chr2 (291-338)||(4292799-4292846)
[»] chr7 (22 HSPs)
chr7 (291-352)||(29467774-29467835)
chr7 (291-355)||(29684113-29684177)
chr7 (270-340)||(44804522-44804592)
chr7 (291-355)||(35156995-35157059)
chr7 (294-355)||(9143502-9143563)
chr7 (291-352)||(24684636-24684697)
chr7 (291-355)||(11840447-11840511)
chr7 (291-355)||(21600970-21601034)
chr7 (291-355)||(34872192-34872256)
chr7 (291-355)||(39651148-39651212)
chr7 (291-338)||(688086-688133)
chr7 (302-352)||(3791513-3791563)
chr7 (291-338)||(39276636-39276683)
chr7 (291-355)||(49146122-49146186)
chr7 (291-338)||(17169047-17169094)
chr7 (293-355)||(27737741-27737803)
chr7 (291-337)||(31900003-31900049)
chr7 (299-339)||(42684816-42684856)
chr7 (291-338)||(4848371-4848418)
chr7 (291-338)||(21670809-21670856)
chr7 (291-338)||(48529950-48529997)
chr7 (302-339)||(47175506-47175543)
[»] chr6 (13 HSPs)
chr6 (278-355)||(33328277-33328354)
chr6 (291-340)||(4897509-4897558)
chr6 (270-355)||(9737752-9737837)
chr6 (270-355)||(25529243-25529328)
chr6 (278-355)||(35133184-35133260)
chr6 (291-338)||(6969312-6969359)
chr6 (291-338)||(15045563-15045610)
chr6 (298-355)||(9981259-9981316)
chr6 (298-338)||(24443957-24443997)
chr6 (291-338)||(1218541-1218588)
chr6 (291-355)||(4107977-4108041)
chr6 (298-355)||(28573828-28573885)
chr6 (291-348)||(34316974-34317031)
[»] scaffold0385 (1 HSPs)
scaffold0385 (291-352)||(8303-8364)
[»] scaffold0009 (2 HSPs)
scaffold0009 (268-354)||(108547-108633)
scaffold0009 (291-352)||(225458-225519)
[»] scaffold0759 (1 HSPs)
scaffold0759 (291-338)||(5908-5955)
[»] scaffold0381 (1 HSPs)
scaffold0381 (291-349)||(9592-9650)
[»] scaffold0057 (1 HSPs)
scaffold0057 (291-338)||(20596-20643)
[»] scaffold0051 (2 HSPs)
scaffold0051 (291-355)||(62085-62149)
scaffold0051 (299-339)||(53387-53427)
[»] scaffold0032 (1 HSPs)
scaffold0032 (277-314)||(31902-31939)
[»] scaffold0069 (1 HSPs)
scaffold0069 (298-338)||(11803-11843)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Complemental strand, 28982153 - 28981817
Alignment:
Q  19 gagcagtgataaagggtgatggtaactattcttaaagatcttattcgaagcaattgggatagtattcttcacgccatccagaaactattatgaattttgt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28982153 gagcagtgataaagggtgatggtaactattcttaaagatcttattcgaagcaattgggatagtattcttcacaccatccagaaactattatgaattttgt 28982054  T
Q  119 attcggtgattgcttgaaattcaaattcatgaatttctatgtcggttttccaatgtgtgtaatgtttggacatgatatgaatatctctaattatatttcc 218  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28982053 attcggtgattgcttggaattcaaattcatgaatttctatgtcggttttctaatgtgtgtaatgtttggacatgatatgaatatctctaattatatttcc 28981954  T
Q  219 taaaataaaaatgaatacttaattactcactttttggtttaattacatctatatatgctaataagaaaatccatgtcccttgaatttaccattttgcccc 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28981953 taaaataaaaatgaatacttaattactcactttttggtttaattacatctatatatactaataagaaaatccatgtcccttgaatttaccattttgcccc 28981854  T
Q  319 tataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  28981853 tataaggggcaatttggtaatcaactaattggttgag 28981817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 40832016 - 40831926
Alignment:
Q  265 atctatatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||    
T  40832016 atctatatatcctaataagaaaatccatgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggttgag 40831926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 29530646 - 29530561
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||    
T  29530646 tatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 29530561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 19369005 - 19368941
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  19369005 atgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19368941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 223
Target Start/End: Complemental strand, 20142967 - 20142874
Alignment:
Q  128 ttgcttgaaattcaaattcatgaatttctatgtcggttttccaatgtgtgtaatgtttggacatgatatgaatatctctaattatatttcctaaaa 223  Q
    ||||||| |||  |||||| ||||||||||||||||||||| |||||||| |||||||||||| ||||||||||  | ||||||||||||||||||    
T  20142967 ttgcttggaatctaaattcttgaatttctatgtcggttttctaatgtgtgcaatgtttggacacgatatgaata--tttaattatatttcctaaaa 20142874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 23270230 - 23270323
Alignment:
Q  128 ttgcttgaaattcaaattcatgaatttctatgtcggttttccaatgtgtgtaatgtttggacatgatatgaatatctctaattatatttcctaaaa 223  Q
    ||||||| |||  |||||||||||||||||||||||||||| |||||||| ||||||||||||  |||||||||  | ||||||||||||||||||    
T  23270230 ttgcttggaatctaaattcatgaatttctatgtcggttttctaatgtgtgcaatgtttggacacaatatgaata--tttaattatatttcctaaaa 23270323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 11602249 - 11602164
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||  ||||||||||||| |||| ||||||||||||||||||||||||||||||  |||||| | ||||||||||||    
T  11602249 tatatactaatataaaaatccatgtccgttgattttaccattttgcccctataaggggcaattcagtaatctattaattggttgag 11602164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 35855212 - 35855276
Alignment:
Q  276 ctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 340  Q
    ||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35855212 ctaataagaaaagaaatgtcccttaaatttaccattttgcccctataaggggcaatttggtaatc 35855276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 18682512 - 18682559
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  18682512 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 18682559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 26102237 - 26102150
Alignment:
Q  268 tatatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||| ||||||||||||   |||||| ||||||||||||||||||||||||||| || ||||||||||||  || ||||||||||    
T  26102237 tatatatactaataagaaaagaaatgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggttgag 26102150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 339
Target Start/End: Complemental strand, 8528188 - 8528119
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 339  Q
    ||||| ||||||||||||   ||||||||||||||||||||| || ||||||||||||||||||||||||    
T  8528188 tatatactaataagaaaagaaatgtcccttgaatttaccattctgtccctataaggggcaatttggtaat 8528119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 11955589 - 11955528
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  11955589 atgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 11955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 8393586 - 8393633
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  8393586 atgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 8393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 22519212 - 22519276
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||   | ||||||||||||    
T  22519212 atgtccattgaatttaccattttgcccctataaggggcaatttagtaaattattaattggttgag 22519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 22473678 - 22473716
Alignment:
Q  302 atttaccattttgcccctataaggggcaatttggtaatc 340  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22473678 atttaccattttgcccctataaggggcaatttggtaatc 22473716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 28979625 - 28979581
Alignment:
Q  214 tttcctaaaataaaaatgaatacttaattactcactttttggttta 259  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||    
T  28979625 tttcctaaaataaaa-tgaatacttaattactcactttttggttta 28979581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 19895709 - 19895645
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||   | ||||||||||||    
T  19895709 atgtccattgaatttaccattttgcccttataaagggcaatttggtaaattagtaattggttgag 19895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 20143333 - 20143279
Alignment:
Q  38 tggtaactattctta--aagatcttattcgaagcaattgggatagtattcttcac 90  Q
    |||||||||||||||  ||||||||||||||| |||| |||||||||||||||||    
T  20143333 tggtaactattcttataaagatcttattcgaaacaatggggatagtattcttcac 20143279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 23269874 - 23269913
Alignment:
Q  51 taaagatcttattcgaagcaattgggatagtattcttcac 90  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  23269874 taaagatcttattcgaagcaatggggatagtattcttcac 23269913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 26777912 - 26777850
Alignment:
Q  293 gtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||   || |||||||||||    
T  26777912 gtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 26777850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 55297407 - 55297343
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||| |||||||||||||| ||||||||| ||| ||||||||||   | ||||||||||||    
T  55297407 atgtccctcgaatttaccattttacccctataaagggtaatttggtaaattattaattggttgag 55297343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 4139411 - 4139364
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||| |||||||||||| |||||| ||||||||||||||||    
T  4139411 atgtccattgattttaccattttgtccctattaggggcaatttggtaa 4139364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 339
Target Start/End: Complemental strand, 15321297 - 15321259
Alignment:
Q  301 aatttaccattttgcccctataaggggcaatttggtaat 339  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  15321297 aatttacaattttgcccctataaggggcaatttagtaat 15321259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 2847390 - 2847341
Alignment:
Q  299 tgaatttaccattttgcccctataaggggcaatttggtaatcaactaatt 348  Q
    ||||||| ||||||||||||||  |||||||||||||||||  |||||||    
T  2847390 tgaattttccattttgcccctaagaggggcaatttggtaatttactaatt 2847341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 53800522 - 53800586
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||| ||||||||||||||| ||  ||||||||||||||||   || |||||||||||    
T  53800522 atgtccattgattttaccattttgcccttaggaggggcaatttggtaaattacaaattggttgag 53800586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 40616184 - 40616094
Alignment:
Q  265 atctatatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||    
T  40616184 atctatatatactaataagaaaatccatgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggttgag 40616094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 36776406 - 36776491
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  36776406 tatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 36776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 45434992 - 45435077
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| || |||||    
T  45434992 tatatactaataagaaaatccatgtcacttgaatttaccattttgcccttataaggggcaatttggtaatctactaaatgattgag 45435077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 41972979 - 41973043
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41972979 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggttgag 41973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 24053916 - 24054001
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||    
T  24053916 tatatactaataagaaaagaaatgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttgag 24054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 40587770 - 40587695
Alignment:
Q  277 taataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  40587770 taataagaaaataaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 40587695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 282 - 355
Target Start/End: Complemental strand, 44389078 - 44389005
Alignment:
Q  282 agaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||| | ||||||||||||    
T  44389078 agaaaatccatgtcccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggttgag 44389005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 8760724 - 8760785
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  8760724 atgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 25836329 - 25836268
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  25836329 atgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 25836268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 25346057 - 25346121
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  25346057 atgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttgag 25346121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 1942812 - 1942873
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  1942812 atgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 1942873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 9472160 - 9472238
Alignment:
Q  276 ctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||   |||||||||||| ||||||||||||| |||||| |||||||||||||||| ||| ||||||||||    
T  9472160 ctaataagaaaagaaatgtcccttgaaattaccattttgcctctataa-gggcaatttggtaatctacttattggttgag 9472238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 8162839 - 8162781
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattg 349  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  8162839 atgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 8162781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 32844172 - 32844233
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| | |||||||||||||||||| ||||||||||||||||||||| ||| |||||||    
T  32844172 atgtcccataaatttaccattttgccccgataaggggcaatttggtaatctacttattggtt 32844233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 42245796 - 42245732
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| |||||||| |||||||||||||||||||||| |||||| ||||| ||| ||||||||||    
T  42245796 atgtcacttgaattcaccattttgcccctataaggggtaatttgataatctacttattggttgag 42245732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 305
Target Start/End: Original strand, 525863 - 525898
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaattt 305  Q
    ||||||||||||||||||||||||||||||||||||    
T  525863 tatatgctaataagaaaatccatgtcccttgaattt 525898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 25620779 - 25620731
Alignment:
Q  290 catgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    ||||||| |||| ||||| ||||||||||||| ||||||||||||||||    
T  25620779 catgtccattgattttactattttgcccctatgaggggcaatttggtaa 25620731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 41534312 - 41534248
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||| |||   | ||||||||||||    
T  41534312 atgtcccatgaatttaccattttgctcctataagggacaatttgataaattattaattggttgag 41534248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 18378866 - 18378819
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| ||||||||| ||||||||| |||| ||||||||||||||||    
T  18378866 atgtcctttgaatttatcattttgcctctattaggggcaatttggtaa 18378819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 7389221 - 7389285
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||| |||||||||||||||| |  ||||||||||||||||   || |||||||||||    
T  7389221 atgtccattgattttaccattttgccccaaggaggggcaatttggtaaattacaaattggttgag 7389285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 265 - 355
Target Start/End: Original strand, 13171622 - 13171712
Alignment:
Q  265 atctatatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13171622 atctatatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 13171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 50120042 - 50119957
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  50120042 tatatactaataagaaaaggaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 50119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 16895993 - 16896072
Alignment:
Q  276 ctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| | ||||||||||||    
T  16895993 ctaataagaaaatccatgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggttgag 16896072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 270 - 354
Target Start/End: Original strand, 51347490 - 51347574
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttga 354  Q
    ||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||    
T  51347490 tatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggttga 51347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 3757728 - 3757813
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   |||| | ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  3757728 tatatactaataagaaaagaaatgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 3757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 20588564 - 20588649
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  20588564 tatatactaataagaaaagaaatgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggttgag 20588649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 30529339 - 30529278
Alignment:
Q  294 tcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  30529339 tcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30529278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 3821262 - 3821198
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  3821262 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 3821198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 24547339 - 24547418
Alignment:
Q  276 ctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||||||||    
T  24547339 ctaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttgag 24547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 8956939 - 8957000
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  8956939 atgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8957000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 8986911 - 8986972
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  8986911 atgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 17730435 - 17730520
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||| | ||||   |||| | |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  17730435 tatatgctaatcaaaaaagaaatgtgctttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggttgag 17730520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 36743286 - 36743201
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   ||||||||| |||||||||||||| | ||||||||||||||||||||||| ||| ||||||||||    
T  36743286 tatatactaataagaaaagaaatgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggttgag 36743201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 37349809 - 37349870
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  37349809 atgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 37349870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 5752474 - 5752521
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5752474 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 5752521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 29712393 - 29712442
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 340  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29712393 atgtcccttaaatttaccattttgcccctataaggggcaatttggtaatc 29712442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 9888953 - 9888895
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattg 349  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  9888953 atgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9888895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 53991604 - 53991554
Alignment:
Q  302 atttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  53991604 atttaccattttgcccctataaggggcaatttggtaatctacttattggtt 53991554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 24948350 - 24948289
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| |||| ||| |||||||    
T  24948350 atgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggtt 24948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 39406295 - 39406234
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||||||| ||| |||||||    
T  39406295 atgttccttgaatttaccatttagcccctataaggggtaatttggtaatctacttattggtt 39406234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 39716781 - 39716734
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  39716781 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 39716734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 352
Target Start/End: Complemental strand, 578657 - 578607
Alignment:
Q  302 atttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||||    
T  578657 atttaccattttgcccctataagggacaatttggtaatctacttattggtt 578607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 15704144 - 15704198
Alignment:
Q  301 aatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||||||||||||| ||||||||||   ||||||||||||||    
T  15704144 aatttaccattttgcccctataaggggaaatttggtaaattactaattggttgag 15704198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 35716351 - 35716313
Alignment:
Q  302 atttaccattttgcccctataaggggcaatttggtaatc 340  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35716351 atttaccattttgcccctataaggggcaatttggtaatc 35716313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 43021894 - 43021976
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||| ||||||||||||   |||| ||||||||||||||| ||||| |||| ||| |||||||||||||| ||| |||||||    
T  43021894 tatatactaataagaaaagaaatgttccttgaatttaccatcttgcctctattaggtgcaatttggtaatctacttattggtt 43021976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 35833477 - 35833420
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaatt 348  Q
    |||||| |||| ||||||||||||||||||| |||||||||||||||||  |||||||    
T  35833477 atgtccattgattttaccattttgcccctatgaggggcaatttggtaattcactaatt 35833420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 355
Target Start/End: Complemental strand, 35498592 - 35498532
Alignment:
Q  295 cccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||| |||||||||||||||| || |||||||||||   ||||||||||||||    
T  35498592 cccttgaatttatcattttgcccctataaaggacaatttggtaaattactaattggttgag 35498532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 12682819 - 12682772
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  12682819 atgtccattgattttaccattttgcccctatgaggggcaatttggtaa 12682772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 352
Target Start/End: Original strand, 50033712 - 50033764
Alignment:
Q  299 tgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||    
T  50033712 tgaatttaccattttgcccttataa-gggcaatttggtaatctacttattggtt 50033764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 46104202 - 46104266
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||| |||||||||||||||| || ||||||||||||||||   || |||||||||||    
T  46104202 atgtccattgattttaccattttgccccaatgaggggcaatttggtaaattacaaattggttgag 46104266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 322
Target Start/End: Complemental strand, 47560282 - 47560251
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctata 322  Q
    ||||||||||||||||||||||||||||||||    
T  47560282 atgtcccttgaatttaccattttgcccctata 47560251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 52799048 - 52799095
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| || ||||||||||||| ||||||| ||||||||||||||||    
T  52799048 atgtcctttaaatttaccattttacccctattaggggcaatttggtaa 52799095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 46626411 - 46626324
Alignment:
Q  268 tatatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  46626411 tatatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 46626324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 19322429 - 19322344
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||    
T  19322429 tatatactaataagaaaataaatgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggttgag 19322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 19400733 - 19400818
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| | ||||||||||||    
T  19400733 tatatactaataagaaaatccatgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggttgag 19400818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 38894757 - 38894839
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||| ||||||||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  38894757 tatatactaataagaaagtaaatgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 38894839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 355
Target Start/End: Complemental strand, 51971361 - 51971272
Alignment:
Q  265 atctatatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||||||||| |||||||| ||| |||||||||||| | ||||||||||||    
T  51971361 atctatatatactaataagaaaattcatgtcccttgaagttaccattttgtccctataa-gggtaatttggtaatctattaattggttgag 51971272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 33075720 - 33075659
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  33075720 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 33075659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 22198971 - 22198910
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||    
T  22198971 atgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggtt 22198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 50557845 - 50557913
Alignment:
Q  286 aatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||| |||||||||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  50557845 aatccatgtcccatgaatttaccattttgtcc-tataaggggcaatttggtaatctactaattggttgag 50557913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 16300412 - 16300476
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||    
T  16300412 atgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttgag 16300476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 47134727 - 47134791
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||    
T  47134727 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 47134791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 29844945 - 29844884
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  29844945 atgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 28570748 - 28570806
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattg 349  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  28570748 atgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 28570806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 1826816 - 1826865
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 340  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  1826816 atgtcccttgaatttaccattttggctctataaggggcaatttggtaatc 1826865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 52306095 - 52306156
Alignment:
Q  294 tcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||||||||||||||||||||||||||||||||| |||   ||||||||||||||    
T  52306095 tccctttaatttaccattttgcccctataaggggcaatttgataaattactaattggttgag 52306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 1367314 - 1367361
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  1367314 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 1367361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 10766220 - 10766270
Alignment:
Q  302 atttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||||||||||||||||||||| ||||||||||||| ||| |||||||    
T  10766220 atttaccattttgcccctataagggtcaatttggtaatctacttattggtt 10766270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 43116045 - 43116119
Alignment:
Q  265 atctatatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaat 339  Q
    |||||||||| ||||||  ||||| ||||||| |||||||| | ||||||||||||  |||||||||||||||||    
T  43116045 atctatatatactaatataaaaatacatgtccattgaatttccaattttgcccctaggaggggcaatttggtaat 43116119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 42678397 - 42678458
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||  ||||||||||||||||||| ||||| ||| |||||||    
T  42678397 atgtcccatgaatttaccattttatccctataaggggcaatttgataatctacttattggtt 42678458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 338
Target Start/End: Complemental strand, 17364660 - 17364620
Alignment:
Q  298 ttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  17364660 ttgaatttaccattttgcccctattaggggcaatttggtaa 17364620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 4890121 - 4890168
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| ||||||||||||||||||| |||| ||||||||||||||||    
T  4890121 atgtcctttgaatttaccattttgcctctattaggggcaatttggtaa 4890168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 29188364 - 29188317
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||||    
T  29188364 atgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 29188317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 33359723 - 33359770
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||||    
T  33359723 atgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 33359770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 5426239 - 5426303
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||| ||||||||||||||| || |||||||||||||||||   || |||||||||||    
T  5426239 atgtccattgattttaccattttgcccttagaaggggcaatttggtaaattacaaattggttgag 5426303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 338
Target Start/End: Complemental strand, 10698172 - 10698135
Alignment:
Q  301 aatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  10698172 aatttaccattttgcccctagaaggggcattttggtaa 10698135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 36887053 - 36886968
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||    
T  36887053 tatatactaataagaaaagaaatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattgattgag 36886968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 284 - 354
Target Start/End: Complemental strand, 12422415 - 12422345
Alignment:
Q  284 aaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttga 354  Q
    ||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12422415 aaaattcatgtcctttgattttaccattttgcccctataaggggcaatttggtaatctactaattggttga 12422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 17643470 - 17643385
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| |||||||||||||  |||||||||||||||| |||||||||| |||||||||||||||||||||| | | ||||||||||    
T  17643470 tatatactaataagaaaataaatgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggttgag 17643385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 30754432 - 30754496
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  30754432 atgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30754496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 6305513 - 6305452
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  6305513 atgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 6305452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 43138610 - 43138549
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  43138610 atgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 43138549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 3088095 - 3088031
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||    
T  3088095 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 3088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 754508 - 754450
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattg 349  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  754508 atgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 754450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 304 - 354
Target Start/End: Complemental strand, 42977883 - 42977833
Alignment:
Q  304 ttaccattttgcccctataaggggcaatttggtaatcaactaattggttga 354  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatctacttattggttga 42977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 12592532 - 12592471
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||||||| ||| |||||||    
T  12592532 atgtcccatgaatttaccagtttacccctataaggggcaatttggtaatctacttattggtt 12592471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 33709877 - 33709813
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||   | ||||||||||||    
T  33709877 atgtcccttgaatttaccattttacccctataaagggcaatttggtaaattagtaattggttgag 33709813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 25698781 - 25698734
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  25698781 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 25698734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 30140525 - 30140589
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||||||||||||||||||||||| | ||| ||||||||||   ||||||||||||||    
T  30140525 atgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttgag 30140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 41689298 - 41689345
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||||    
T  41689298 atgtcctttgaatttaccattttgcccctattatgggcaatttggtaa 41689345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 338
Target Start/End: Original strand, 34715632 - 34715666
Alignment:
Q  304 ttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||||||||||||||| ||||||||||||||||    
T  34715632 ttaccattttgcccctattaggggcaatttggtaa 34715666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Complemental strand, 12706127 - 12706087
Alignment:
Q  299 tgaatttaccattttgcccctataaggggcaatttggtaat 339  Q
    ||||||||| |||||||||||| |||||||||||| |||||    
T  12706127 tgaatttacaattttgcccctagaaggggcaatttagtaat 12706087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 327
Target Start/End: Complemental strand, 26602232 - 26602196
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataagggg 327  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  26602232 atgtcccttgaatttaccattttacccttataagggg 26602196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 19486212 - 19486276
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  19486212 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19486276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 17836990 - 17837051
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  17836990 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 17837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 32677247 - 32677186
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  32677247 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 32677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 10876654 - 10876571
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   ||||||||||||||||||||||||||||  |||||||||||||||||||| ||| ||||||||||    
T  10876654 tatatactaataagaaaagaaatgtcccttgaatttaccattttgcccc--taaggggcaatttggtaatctacttattggttgag 10876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 9920973 - 9920912
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  9920973 atgtcccatggatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 9920912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 19486168 - 19486111
Alignment:
Q  298 ttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  19486168 ttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttgag 19486111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 277 - 355
Target Start/End: Original strand, 42781020 - 42781098
Alignment:
Q  277 taataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||   |||||||||||||||| ||||||| |||| |||||||||||||||||||| | | ||||||||||    
T  42781020 taataagaaaagaaatgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatctatttattggttgag 42781098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 10050253 - 10050189
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||||||||||||||||||||||| |||||||||||| |||   ||||||||||||||    
T  10050253 atgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttgag 10050189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 28607244 - 28607308
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||   || |||||||||||    
T  28607244 atgtccattgaatttaccattttgtccctataaggggcaatttggtaaattacaaattggttgag 28607308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 2952780 - 2952827
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  2952780 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 2952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 9545839 - 9545792
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  9545839 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 9545792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 18096514 - 18096558
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttgg 335  Q
    |||||| |||||||||||||||||||||||||||||| |||||||    
T  18096514 atgtcctttgaatttaccattttgcccctataaggggtaatttgg 18096558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 24520889 - 24520953
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||  |||||||| |||||||| ||||||||||||   ||||||||||||||    
T  24520889 atgtcccttgaatttataattttgcctctataaggagcaatttggtaaattactaattggttgag 24520953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 4292846 - 4292799
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||| ||||| | ||||||||||||||    
T  4292846 atgtcctttgaatttaccattttgctcctattaagggcaatttggtaa 4292799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 29467774 - 29467835
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  29467774 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 29684177 - 29684113
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  29684177 atgtgccttgaatttaccattttacccctataaggggcaatttggtaatctactaattggttgag 29684113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 44804522 - 44804592
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 340  Q
    ||||| ||||||||||||   |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44804522 tatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttggtaatc 44804592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 35157059 - 35156995
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||    
T  35157059 atgtcacttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggttgag 35156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 9143502 - 9143563
Alignment:
Q  294 tcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||    
T  9143502 tcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaatttgttgag 9143563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 24684697 - 24684636
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  24684697 atgtcccatgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 24684636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 11840511 - 11840447
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||   | ||||||||||||    
T  11840511 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 11840447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 21601034 - 21600970
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||   | ||||||||||||    
T  21601034 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 21600970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 34872192 - 34872256
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||    
T  34872192 atgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 34872256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 39651212 - 39651148
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||   ||||||||||||||    
T  39651212 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttgag 39651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 688086 - 688133
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  688086 atgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 688133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 3791513 - 3791563
Alignment:
Q  302 atttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  3791513 atttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 39276636 - 39276683
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  39276636 atgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 39276683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 49146186 - 49146122
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||||||   || |||||||||||    
T  49146186 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 49146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 17169047 - 17169094
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||||    
T  17169047 atgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 17169094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 355
Target Start/End: Complemental strand, 27737803 - 27737741
Alignment:
Q  293 gtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||||||| ||||||||| ||  ||||||||||   ||||||||||||||    
T  27737803 gtcccttgaatttaccattttacccctataaaggataatttggtaaattactaattggttgag 27737741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 337
Target Start/End: Complemental strand, 31900049 - 31900003
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggta 337  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  31900049 atgtcctttgaatttacaattttgcccctattaggggcaatttggta 31900003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 42684816 - 42684856
Alignment:
Q  299 tgaatttaccattttgcccctataaggggcaatttggtaat 339  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  42684816 tgaatttaccattttgcccctataaggggcattttagtaat 42684856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 4848371 - 4848418
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||| ||||||||||||||||||| ||||| ||||||||||    
T  4848371 atgtccattgattttaccattttgcccctatgaggggtaatttggtaa 4848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 21670856 - 21670809
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    ||||||||||||||||| ||||||||||||||| ||  ||||||||||    
T  21670856 atgtcccttgaatttactattttgcccctataaaggataatttggtaa 21670809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 48529997 - 48529950
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| ||||| ||||||||||||||||||  |||||||||||||||    
T  48529997 atgtcctttgaaattaccattttgcccctattgggggcaatttggtaa 48529950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 47175543 - 47175506
Alignment:
Q  302 atttaccattttgcccctataaggggcaatttggtaat 339  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  47175543 atttacaattttgcccctagaaggggcaatttggtaat 47175506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 278 - 355
Target Start/End: Complemental strand, 33328354 - 33328277
Alignment:
Q  278 aataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||||| || ||||||||||||||| |||| |||||||||||||||| || ||||||||||||||    
T  33328354 aataagaaaatccatgtcctttaaatttaccattttgctcctacaaggggcaatttggtagtctactaattggttgag 33328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 4897558 - 4897509
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4897558 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatc 4897509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 355
Target Start/End: Complemental strand, 9737837 - 9737752
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||||||||   |||||||||||||||||||||||| ||||||||||||||||||| ||||| | | ||||||||||    
T  9737837 tatatactaataagaaaagaaatgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggttgag 9737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 270 - 355
Target Start/End: Original strand, 25529243 - 25529328
Alignment:
Q  270 tatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||| ||||||  ||||||||||||| |||  ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  25529243 tatatactaatataaaaatccatgtccgttgcttttacgattttgctcctataaggggcaatttggtaatctactaattggttgag 25529328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 35133184 - 35133260
Alignment:
Q  278 aataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    ||||||||||||||||||| || |||||||||||||||| |||||| |||||||||| ||||| ||||||||||||||    
T  35133184 aataagaaaatccatgtcctttaaatttaccattttgcctctataa-gggcaatttgataatctactaattggttgag 35133260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 6969359 - 6969312
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6969359 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 6969312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 15045610 - 15045563
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  15045610 atgtcccttgaatttaccattttgcccctataaagggtaatttggtaa 15045563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 9981316 - 9981259
Alignment:
Q  298 ttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||||||||||||| ||||||||||||||||||||||||    |||||||||||||    
T  9981316 ttgaatttaccattttacccctataaggggcaatttggtaaattgctaattggttgag 9981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 24443957 - 24443997
Alignment:
Q  298 ttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  24443957 ttgaatttaccattttgcccctattaggggcaatttggtaa 24443997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 1218541 - 1218588
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||||    
T  1218541 atgtcctttgaatttaccattttgcccctattaagggcaatttggtaa 1218588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 4107977 - 4108041
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||| ||||||||||| ||||||| ||||||||||||||||   || |||||||||||    
T  4107977 atgtccattgattttaccatttttcccctatgaggggcaatttggtaaattacaaattggttgag 4108041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 28573885 - 28573828
Alignment:
Q  298 ttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||| ||||||||||||||||||  ||||||||||||||||   || |||||||||||    
T  28573885 ttgattttaccattttgcccctaggaggggcaatttggtaaattacaaattggttgag 28573828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 34316974 - 34317031
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaatt 348  Q
    |||||| |||| |||||| |||||||||||  |||||||||||||||||  |||||||    
T  34316974 atgtccattgattttacctttttgcccctaagaggggcaatttggtaatttactaatt 34317031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 8364 - 8303
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  8364 atgtcccatgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 108547 - 108633
Alignment:
Q  268 tatatatgctaataagaaaatccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttga 354  Q
    ||||||| ||||||||||||   |||||||||||||||||||||||| ||| |||||||| |||||||||||| ||  |||||||||    
T  108547 tatatatactaataagaaaagaaatgtcccttgaatttaccattttgtccccataaggggtaatttggtaatctacgtattggttga 108633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 352
Target Start/End: Original strand, 225458 - 225519
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggtt 352  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||||    
T  225458 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 225519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 5955 - 5908
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5955 atgtcccatgaatttaccattttgcccctataaggggcaatttggtaa 5908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 9592 - 9650
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattg 349  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  9592 atgtcccatgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 20643 - 20596
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  20643 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaa 20596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 355
Target Start/End: Original strand, 62085 - 62149
Alignment:
Q  291 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 355  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||||||   || |||||||||||    
T  62085 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 62149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 53387 - 53427
Alignment:
Q  299 tgaatttaccattttgcccctataaggggcaatttggtaat 339  Q
    ||||||| | |||||||||||| ||||||||||||||||||    
T  53387 tgaatttccaattttgcccctagaaggggcaatttggtaat 53427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 31939 - 31902
Alignment:
Q  277 taataagaaaatccatgtcccttgaatttaccattttg 314  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31939 taataagaaaatccatgtgccttgaatttaccattttg 31902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 11803 - 11843
Alignment:
Q  298 ttgaatttaccattttgcccctataaggggcaatttggtaa 338  Q
    |||||||||||||||||||  ||| ||||||||||||||||    
T  11803 ttgaatttaccattttgcctttattaggggcaatttggtaa 11843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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