View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_18 (Length: 378)
Name: NF11006_low_18
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 42242682 - 42242334
Alignment:
| Q |
19 |
aaagagttaaattggacaaatgtgtatgtatggattatctcagtcagaatgggatggcaaataaactcaaatccatcatattcatcgtgaattggaactt |
118 |
Q |
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| T |
42242682 |
aaagagttaaattggacaaatgtgtatgtatggattatctcagttagaatcggatggcaaataaactcaaatccaccatattcatcgtgaattggaactt |
42242583 |
T |
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| Q |
119 |
ccttcnnnnnnnnaagttaataactacaatttataatgtaaatgaaataggcaaaccttccaatgttcatcaaatataaatatattgctagtatttaaac |
218 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42242582 |
ccttctgttttttaagttaataacta--atttataatgtaaatgaaataggcaaaccttccaatgttcatcaaatataaatatattgctagtatttaaac |
42242485 |
T |
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| Q |
219 |
atccatcatttctattacaacatgttcaatggcaataatgtgttatttgagtggg-nnnnnnnntcgaagatgagattctcttgtaaaataaagctcta- |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42242484 |
atccatcatttctattacaacatgttcaatggcaataatttgttatttgagtgggaaaaaaaaatcgaagatgagattctcttgtaaaataaagctctag |
42242385 |
T |
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| Q |
317 |
--gtctgcgatgcttgaatctggccttttatttttcccatggcgtgattct |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42242384 |
acgtctgcgatgcttgaatctggccttttatttttcccatggcgtgattct |
42242334 |
T |
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