View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_19 (Length: 365)
Name: NF11006_low_19
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 153 - 349
Target Start/End: Original strand, 12599773 - 12599969
Alignment:
| Q |
153 |
aagtcttagtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagtttctgttccc |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12599773 |
aagtcttagtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagtttctgttccc |
12599872 |
T |
|
| Q |
253 |
tgcagttgaagggaaaaaagaacagagaagagtaaggataaaccttctttgtttgctttgctagnnnnnnntacatcaacttgccaaggtgcaagtt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12599873 |
tgcagttgaagggaaaaaagaacagagaagagtaaggataaaccttctttgtttgctttgctagaaaaaaatacatcaacttgccaaggtgcaagtt |
12599969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 12598622 - 12598673
Alignment:
| Q |
107 |
gcactgatataagtatcaaaaatacttcatttcacttctatatcacaagtct |
158 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12598622 |
gcactgatataagtataaaaaatacttcatttcacttctatatcacaagtct |
12598673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 160 - 310
Target Start/End: Complemental strand, 3374545 - 3374395
Alignment:
| Q |
160 |
agtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagtttctgttccctgcagtt |
259 |
Q |
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||||||||||||||||||||||||||||||||| | | ||||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||| || |
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| T |
3374545 |
agtttcttcatctccttgaaagtatcagtactccaaaaaaccctactagttctttgcaccttcaaaaccaatccctctacagtttcagttccttgcattt |
3374446 |
T |
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| Q |
260 |
gaagggaaaaaagaacagagaagagtaaggataaaccttctttgtttgctt |
310 |
Q |
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| T |
3374445 |
gaagggaaaagagaacagagaagagtatggataaaccttctttgtttgctt |
3374395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 3325720 - 3325820
Alignment:
| Q |
153 |
aagtcttagtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagtttctgttccc |
252 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
3325720 |
aagtctcagtttcttcatctccttgaaagaatcagtacttaagggaattctaatggttctttgcaccttcaaaaccaatccctctacagattttgttccc |
3325819 |
T |
|
| Q |
253 |
t |
253 |
Q |
| |
|
| |
|
|
| T |
3325820 |
t |
3325820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 3287309 - 3287354
Alignment:
| Q |
208 |
gttctttgcaccttcaaaaccaatccctctacagtttctgttccct |
253 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3287309 |
gttctttgcgacttcaaaaccaatccctctacagtttctgttccct |
3287354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 3263283 - 3263383
Alignment:
| Q |
153 |
aagtcttagtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagtttctgttccc |
252 |
Q |
| |
|
|||||| || |||||||| |||||||||| ||||| ||| || ||| || ||||||||| | | |||||| ||||||||||||||||||||||||| |
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| T |
3263283 |
aagtctcagattcttcatttccttgaaagaatcagcactgaagcaaactctgctggttctttcaaacctcaaaatcaatccctctacagtttctgttccc |
3263382 |
T |
|
| Q |
253 |
t |
253 |
Q |
| |
|
| |
|
|
| T |
3263383 |
t |
3263383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 32411804 - 32411914
Alignment:
| Q |
153 |
aagtcttagtttcttcatctccttgaaagtatcagtactctagagaaccctattggttctttgcaccttcaaaaccaatccctctacagtttctgttccc |
252 |
Q |
| |
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|||||||||||||||||| |||||||||| || |||||| || ||| || | ||||||||||| ||| || |||||||||| ||||||| |||| || |
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| T |
32411804 |
aagtcttagtttcttcatttccttgaaagaattagtactgaagcaaactctgtcggttctttgcaacttaaacgccaatccctccacagtttttgttacc |
32411903 |
T |
|
| Q |
253 |
tgcagttgaag |
263 |
Q |
| |
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|||| |||||| |
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| T |
32411904 |
tgcatttgaag |
32411914 |
T |
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