View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11006_low_2 (Length: 861)

Name: NF11006_low_2
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11006_low_2
NF11006_low_2
[»] chr6 (40 HSPs)
chr6 (18-438)||(26062734-26063159)
chr6 (18-438)||(26082703-26083128)
chr6 (18-228)||(26147022-26147232)
chr6 (451-795)||(26146450-26146806)
chr6 (484-675)||(25986741-25986929)
chr6 (457-661)||(25514427-25514640)
chr6 (263-455)||(26146828-26147020)
chr6 (278-455)||(25548656-25548833)
chr6 (212-438)||(25453157-25453399)
chr6 (255-438)||(25489066-25489249)
chr6 (558-795)||(25486852-25487087)
chr6 (558-748)||(26059545-26059736)
chr6 (558-748)||(26079515-26079706)
chr6 (21-209)||(25453922-25454116)
chr6 (465-561)||(26061314-26061410)
chr6 (465-561)||(26081284-26081380)
chr6 (255-438)||(24771350-24771533)
chr6 (452-546)||(25548535-25548628)
chr6 (485-561)||(25488066-25488142)
chr6 (126-209)||(25489850-25489933)
chr6 (609-707)||(27661938-27662036)
chr6 (140-186)||(25548902-25548948)
chr6 (624-698)||(27423901-27423975)
chr6 (749-825)||(27715139-27715218)
chr6 (207-251)||(25548859-25548903)
chr6 (608-695)||(27079030-27079117)
chr6 (749-825)||(27682437-27682516)
chr6 (608-664)||(27715036-27715092)
chr6 (755-825)||(28782487-28782560)
chr6 (755-825)||(28789861-28789934)
chr6 (604-689)||(25077802-25077887)
chr6 (749-826)||(26852085-26852165)
chr6 (574-640)||(27703216-27703284)
chr6 (761-825)||(28795879-28795946)
chr6 (153-209)||(24772417-24772473)
chr6 (755-826)||(26626659-26626733)
chr6 (755-826)||(26732636-26732710)
chr6 (743-795)||(27078815-27078867)
chr6 (656-698)||(27703284-27703326)
chr6 (754-826)||(26953130-26953205)
[»] chr4 (6 HSPs)
chr4 (755-847)||(18652126-18652218)
chr4 (755-847)||(18686224-18686316)
chr4 (755-847)||(18720714-18720806)
chr4 (755-847)||(18728150-18728242)
chr4 (760-845)||(18696035-18696120)
chr4 (755-829)||(18676184-18676261)
[»] scaffold0003 (1 HSPs)
scaffold0003 (624-698)||(63388-63462)
[»] scaffold0349 (2 HSPs)
scaffold0349 (749-825)||(16726-16805)
scaffold0349 (608-664)||(16852-16908)
[»] chr2 (1 HSPs)
chr2 (451-518)||(17988740-17988807)
[»] chr8 (2 HSPs)
chr8 (637-695)||(29270329-29270387)
chr8 (749-825)||(29270443-29270522)
[»] scaffold0419 (1 HSPs)
scaffold0419 (755-825)||(11005-11078)
[»] scaffold0277 (2 HSPs)
scaffold0277 (755-825)||(10265-10338)
scaffold0277 (761-825)||(1311-1378)
[»] chr1 (1 HSPs)
chr1 (804-847)||(26139515-26139555)


Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 26063159 - 26062734
Alignment:
Q  18 tgaatatatttgcttatatctttatgcaattgaattttgatgaatggtcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26063159 tgaatatatttgcttatatctttatgcaattgaattttgatgaatgatcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc 26063060  T
Q  118 gagcgaacgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatcgatccaag 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26063059 gagcgaatgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggacatcgatccaag 26062960  T
Q  218 catcagtaccagcttacattctgaaagaaca----cccatccttcccacataggactctaccaaattccagatggattggatattgatattcagacctga 313  Q
    ||||||||||||||||||||||||||||  |     |||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  26062959 catcagtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctga 26062860  T
Q  314 tctagc-nnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattt 412  Q
    ||||||        ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  26062859 tctagcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactacatacaatgcaaatattcaattt 26062760  T
Q  413 tcatagttaactaaaacaccatataa 438  Q
    ||||||||||||||||||||||||||    
T  26062759 tcatagttaactaaaacaccatataa 26062734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 26083128 - 26082703
Alignment:
Q  18 tgaatatatttgcttatatctttatgcaattgaattttgatgaatggtcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26083128 tgaatatatttgcttatatctttatgcaattgaattttgatgaatgatcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc 26083029  T
Q  118 gagcgaacgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatcgatccaag 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26083028 gagcgaatgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagggacatcgatccaag 26082929  T
Q  218 catcagtaccagcttacattctgaaagaaca----cccatccttcccacataggactctaccaaattccagatggattggatattgatattcagacctga 313  Q
    ||||||||||||||||||||||||||||  |     |||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  26082928 catcagtaccagcttacattctgaaagataattatgccattcttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctga 26082829  T
Q  314 tctagc-nnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattt 412  Q
    ||||||        ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||| |||||    
T  26082828 tctagcgaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaacactacatacaatgcaaatattcaattt 26082729  T
Q  413 tcatagttaactaaaacaccatataa 438  Q
    ||||||||||||||||||||||||||    
T  26082728 tcatagttaactaaaacaccatataa 26082703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 26147232 - 26147022
Alignment:
Q  18 tgaatatatttgcttatatctttatgcaattgaattttgatgaatggtcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26147232 tgaatatatttgcttatatctttatgcaattgaattttgatgaatggacatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgc 26147133  T
Q  118 gagcgaacgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatcgatccaag 217  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  26147132 gagcgaatgcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttctgtagtagagagggacatcgatccaag 26147033  T
Q  218 catcagtacca 228  Q
    |||||||||||    
T  26147032 catcagtacca 26147022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 451 - 795
Target Start/End: Complemental strand, 26146806 - 26146450
Alignment:
Q  451 cataaaacattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacg 549  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26146806 cataaaacattcaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaatgcatgtctccaaacg 26146707  T
Q  550 tacagtaatgaatttgtaactgacgactatatacagaaattaatcaacatt-----------tatacaacaaagcacaaacctgcaatgttgaaattgag 638  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||| ||||||    
T  26146706 tacagtaatgaatttgtaact---gactatatacagaaattaatcaacatttatacaaagtatatacaacaaagcacaaacctgcaatgttgagattgag 26146610  T
Q  639 agaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcatcttgtactcttctgcttaatatttc 738  Q
    |||||||||||||||||||||||||||||||||||||| ||  |||||||||||| ||    |||||||||||||||||  |    ||||||||||||||    
T  26146609 agaataacaagaagacggttaactttatgatggacctagactaaggaatgtacccaac----atctttctttcatcttgcgc---actgcttaatatttc 26146517  T
Q  739 aatctca----------tcctcctcctctgcctctgaaactcccacttccataaatctttgcttttt 795  Q
    |||||||          ||||||||| ||  ||||||||||||||||||||  ||||||||||||||    
T  26146516 aatctcatccctcctcctcctcctcccctttctctgaaactcccacttccaccaatctttgcttttt 26146450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 484 - 675
Target Start/End: Complemental strand, 25986929 - 25986741
Alignment:
Q  484 cctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaatttgtaactgacgactatatac 583  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||    
T  25986929 cctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaatttgtaacggac---tatatac 25986833  T
Q  584 agaaattaatcaacatttatacaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacct 675  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25986832 agaaattaatcaacatttatacaacaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggttaactttatgatggacct 25986741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 457 - 661
Target Start/End: Complemental strand, 25514640 - 25514427
Alignment:
Q  457 acattaaaatacattatccgaggttggcctccat-aatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagt 555  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25514640 acattaaaatacattatccgaggttggcctccatgaatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagt 25514541  T
Q  556 aatgaatttgtaactgacgactatatacagaaattaatcaacatt-----------tatacaacaaagcacaaacctgcaatgttgaaattgagagaata 644  Q
    |||||||||||||||   |||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||| ||||||||||||    
T  25514540 aatgaatttgtaact---gactatatacagaaattaatcaacatttatacaaagtatatacaacaaagcacaaacctgcaatgttgagattgagagaata 25514444  T
Q  645 acaagaagacggttaac 661  Q
    |||||||||||||||||    
T  25514443 acaagaagacggttaac 25514427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 263 - 455
Target Start/End: Complemental strand, 26147020 - 26146828
Alignment:
Q  263 ataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgat 362  Q
    |||||||||||||||||||||||||||||| |||||||   ||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  26147020 ataggactctaccaaattccagatggattgcatattgaagctcagacctgatctagcgaaaaaattgaggaaagcttttgtgaattcatttgactttgat 26146921  T
Q  363 aaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataaaaactactttttcataa 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26146920 aaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcataggtaactaaaacaccatataaaaactactttttcataa 26146828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 278 - 455
Target Start/End: Complemental strand, 25548833 - 25548656
Alignment:
Q  278 attccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaataga 377  Q
    ||||||||||||||| |||||||   ||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25548833 attccagatggattgaatattgaagctcagacctgatctagcgaaaaaaatgaggaaagcttttgtcaattcatttgactttgataaaaaccagaataga 25548734  T
Q  378 ttataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataaaaactactttttcataa 455  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25548733 ttataaaaattacatacaatgcaaatattgaatattcatagttaactaaaacaccatataaaaactactttttcataa 25548656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 212 - 438
Target Start/End: Complemental strand, 25453399 - 25453157
Alignment:
Q  212 tccaagcatcagtaccagcttacattctgaaagaacaccc--------------atccttcccacataggactctaccaaattccagatggattggatat 297  Q
    |||| |||||||||||||||||||||||||||||||||||              || ||||||| |||||||||||||||||||||||||||||||||||    
T  25453399 tccacgcatcagtaccagcttacattctgaaagaacaccctcactaattatgccattcttcccatataggactctaccaaattccagatggattggatat 25453300  T
Q  298 tgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttgactttgataaaaaccagaatagattataaaaatt--acataca 395  Q
    |||  |||||  ||||||||||       ||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |  |||||||    
T  25453299 tgaagttcaggtctgatctagcaaaaaaattgaggaaagcttttgtcaattcatttgactcagataaaaaccagaatagattataaaaactacacataca 25453200  T
Q  396 atgcaaatattgaattttcatagttaactaaaacaccatataa 438  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  25453199 atgcaaatattgaattttcatagttaactaaaacaccacataa 25453157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 255 - 438
Target Start/End: Complemental strand, 25489249 - 25489066
Alignment:
Q  255 cttcccacataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnn-ttgaggaaagcttttgtgaattcattt 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||        ||||||||||||||||| |||||||||    
T  25489249 cttcccacataggactctaccaaattccagatggattggatattgaagttcaggcctgatctagcgaaaaaaattgaggaaagcttttgtcaattcattt 25489150  T
Q  354 gactttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataa 438  Q
    ||||  |||||||||||||||||||||||| | | |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25489149 gactcagataaaaaccagaatagattataacact-acatacaatgcaaatattcaattttcatagttaactaaaacaccatataa 25489066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 558 - 795
Target Start/End: Complemental strand, 25487087 - 25486852
Alignment:
Q  558 tgaatttgtaactgacgactatatacagaaattaatcaacatttatacaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggt 657  Q
    ||||||||||||||||   ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25487087 tgaatttgtaactgac---tatatacagaaatt--tcaacatttatacaacaaagcacaaacctgcaatgttgagattgagagaataacaagaagacggt 25486993  T
Q  658 taactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcatcttgtactcttctgcttaatatttcaatctca----------tc 747  Q
    ||||||||||||||||||| ||  |||||||||||| ||    |||||||||||||||||  |    |||||||||||||||||||||          ||    
T  25486992 taactttatgatggacctagactaaggaatgtacccaac----atctttctttcatcttgcgc---actgcttaatatttcaatctcatccctcctcctc 25486900  T
Q  748 ctcctcctctgcctctgaaactcccacttccataaatctttgcttttt 795  Q
    ||||||| ||  ||||||||||||||||||||  ||||||||||||||    
T  25486899 ctcctcccctttctctgaaactcccacttccaccaatctttgcttttt 25486852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 558 - 748
Target Start/End: Complemental strand, 26059736 - 26059545
Alignment:
Q  558 tgaatttgtaactgacgactatatacagaaattaatcaacatttatacaa-----------caaagcacaaacctgcaatgttgaaattgagagaataac 646  Q
    |||||||||||||||| ||   ||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||    
T  26059736 tgaatttgtaactgactac---atacagaaattaatcaacatttatacaaagtataaacatcaaagcacaaacctgcaatgttgagattgagagaataac 26059640  T
Q  647 aagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcatcttgtactcttctgcttaatatttcaatctcat 746  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |    ||||||||||||||||||||||    
T  26059639 aagaagacggttaactttatgatggacctaaaccgaggaatgtaccccac----atctttctttcatcttgtgc---actgcttaatatttcaatctcat 26059547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 558 - 748
Target Start/End: Complemental strand, 26079706 - 26079515
Alignment:
Q  558 tgaatttgtaactgacgactatatacagaaattaatcaacatttatacaa-----------caaagcacaaacctgcaatgttgaaattgagagaataac 646  Q
    |||||||||||||||| ||   ||||||||||||||||||||||||||||           |||||||||||||||||||||||| ||||||||||||||    
T  26079706 tgaatttgtaactgactac---atacagaaattaatcaacatttatacaaagtataaacatcaaagcacaaacctgcaatgttgagattgagagaataac 26079610  T
Q  647 aagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttctttcatcttgtactcttctgcttaatatttcaatctcat 746  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |    ||||||||||||||||||||||    
T  26079609 aagaagacggttaactttatgatggacctaaaccgaggaatgtaccccac----atctttctttcatcttgtgc---actgcttaatatttcaatctcat 26079517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 25454116 - 25453922
Alignment:
Q  21 atatatttgcttatatctttatgcaattgaattttgatgaatggtcatggcaaacccatttaattaaaaattaaattctattacctgagttgcttgcgag 120  Q
    |||||||| ||||||||||||||||||||||||||||||||||  | |||||||||| ||||| | ||| ||||||| |||||||||||||||| |||||    
T  25454116 atatatttacttatatctttatgcaattgaattttgatgaatgcacgtggcaaacccgtttaactgaaa-ttaaattttattacctgagttgctcgcgag 25454018  T
Q  121 cgaacgcttcaacccttgtttccatgaatgtgtgta-------actaattgccagttaaggcccttggtctatgttcagtagtagagagagacatc 209  Q
    |||| |||||||| |  |||||||||||||||||||       ||||||  ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  25454017 cgaatgcttcaacacacgtttccatgaatgtgtgtaactattaactaatcaccagttaaggcccttggtctatgttcaatagaagagagggacatc 25453922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 465 - 561
Target Start/End: Complemental strand, 26061410 - 26061314
Alignment:
Q  465 atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa 561  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||||||||    
T  26061410 atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaa 26061314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 465 - 561
Target Start/End: Complemental strand, 26081380 - 26081284
Alignment:
Q  465 atacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa 561  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||||||||    
T  26081380 atacattatccaaggttggcctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaa 26081284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 255 - 438
Target Start/End: Complemental strand, 24771533 - 24771350
Alignment:
Q  255 cttcccacataggactctaccaaattccagatggattggatattgatattcagacctgatctagcnnnnnnnttgaggaaagcttttgtgaattcatttg 354  Q
    |||||||||||||||| ||||||| |||| ||||||||||| ||||  ||||||| | |||||||       ||||||||||||||||| |||||| |||    
T  24771533 cttcccacataggactttaccaaactccacatggattggattttgaagttcagacattatctagcacaaaaattgaggaaagcttttgtcaattcacttg 24771434  T
Q  355 actttgataaaaaccagaatagattataaaaattacatacaatgcaaatattgaattttcatagttaactaaaacaccatataa 438  Q
    |   ||||||||||||||||||  | |||||| | ||| ||||||||||||||||||| | ||||||||| |||||||||||||    
T  24771433 atgctgataaaaaccagaatagtgtgtaaaaactgcatgcaatgcaaatattgaatttacttagttaacttaaacaccatataa 24771350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 452 - 546
Target Start/End: Complemental strand, 25548628 - 25548535
Alignment:
Q  452 ataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaa 546  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  25548628 ataaaacattcaaatacattatccgaggttggcctccatattttacatgtacttctaaaatggtattcatt-tcaaatctaatgcatgcctccaa 25548535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 485 - 561
Target Start/End: Complemental strand, 25488142 - 25488066
Alignment:
Q  485 ctccataatttacatgtacttctaaaatggtattcattctataatctaatgcatgcctccaaacgtacagtaatgaa 561  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||| |||||||||||||    
T  25488142 ctccataatttacatgtacttctaaaatggtgttcattctataatctaatgcatgcatctaaatgtacagtaatgaa 25488066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 25489933 - 25489850
Alignment:
Q  126 gcttcaacccttgtttccatgaatgtgtgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatc 209  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  25489933 gcttcaacacttgtttccatgaatgtgtgtaactaatcaccagttaaggcccttggtctatgttcaatagaagagagggacatc 25489850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 609 - 707
Target Start/End: Original strand, 27661938 - 27662036
Alignment:
Q  609 aaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacatatatctttc 707  Q
    ||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||||||  | ||||  | | ||||||||||||||||||| ||||||    
T  27661938 aaagcacaaacctgcaaagttgagattgagaggataacaacaagacggttaactttatggcgcacctggatcaaggaatgtaccccacatatttctttc 27662036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 25548948 - 25548902
Alignment:
Q  140 ttccatgaatgtgtgtaactaattgccagttaaggcccttggtctat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25548948 ttccatgaatgtgtgtaactaattgccagttaaggcccttggtctat 25548902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 624 - 698
Target Start/End: Original strand, 27423901 - 27423975
Alignment:
Q  624 aatgttgaaattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacat 698  Q
    |||||||| |||||||||||||||| ||  ||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  27423901 aatgttgagattgagagaataacaacaaagcggttaactttatgatgaacctagaccaaggaatgtacccaacat 27423975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 749 - 825
Target Start/End: Original strand, 27715139 - 27715218
Alignment:
Q  749 tcctcctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| |   | |||| |||||||||||||||||||||    
T  27715139 tcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagaggaggctcaaattgtgataatgaagtatt 27715218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 25548903 - 25548859
Alignment:
Q  207 atcgatccaagcatcagtaccagcttacattctgaaagaacaccc 251  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  25548903 atcgatccaagcatcagtaccaacttacattctgaaagaacaccc 25548859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 608 - 695
Target Start/End: Complemental strand, 27079117 - 27079030
Alignment:
Q  608 caaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtacccca 695  Q
    |||||||||||||| ||||||||| |||||||||||||||| |||| || |||| | || ||| ||||| ||  ||||||||||||||    
T  27079117 caaagcacaaaccttcaatgttgagattgagagaataacaacaagatggctaacctcataatgcacctagacaaaggaatgtacccca 27079030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 749 - 825
Target Start/End: Complemental strand, 27682516 - 27682437
Alignment:
Q  749 tcctcctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    |||||||||| |||||||||||| |||||||  |||||||||||||| |   | |||| |||||||||||||||||||||    
T  27682516 tcctcctctgtctctgaaactccaacttccaccaatctttgcttttttagaggaggctcaaattgtgataatgaagtatt 27682437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 664
Target Start/End: Original strand, 27715036 - 27715092
Alignment:
Q  608 caaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaacttt 664  Q
    ||||||||||||||| | | |||| ||||||||||||||||||||||| ||||||||    
T  27715036 caaagcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 27715092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 755 - 825
Target Start/End: Complemental strand, 28782560 - 28782487
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    |||| |||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  28782560 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28782487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 755 - 825
Target Start/End: Complemental strand, 28789934 - 28789861
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    |||| |||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  28789934 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28789861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 604 - 689
Target Start/End: Complemental strand, 25077887 - 25077802
Alignment:
Q  604 acaacaaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaactttatgatggacc-taaaccgaggaatgt 689  Q
    |||||||| ||||||||||||||||||  ||| ||| || ||||| |||||||||||||||| |||| ||| |||||| ||||||||    
T  25077887 acaacaaaacacaaacctgcaatgttgtgattaaga-aacaacaacaagacggttaactttacgatgcaccttaaaccaaggaatgt 25077802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 749 - 826
Target Start/End: Complemental strand, 26852165 - 26852085
Alignment:
Q  749 tcctcctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtattg 826  Q
    |||||||||| |||||||||||  |||||||| |||||||||||||| |   | |||  ||||||||||||||||||||||    
T  26852165 tcctcctctgtctctgaaactctaacttccatcaatctttgcttttttagaggaggcacaaattgtgataatgaagtattg 26852085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 574 - 640
Target Start/End: Original strand, 27703216 - 27703284
Alignment:
Q  574 gactatatacagaaattaatcaacatt--tatacaacaaagcacaaacctgcaatgttgaaattgagag 640  Q
    |||||||||||||||||||||||||||  || |||  ||| ||||||||| ||||||||| ||||||||    
T  27703216 gactatatacagaaattaatcaacatttgtaaacagaaaatcacaaacctccaatgttgagattgagag 27703284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 761 - 825
Target Start/End: Complemental strand, 28795946 - 28795879
Alignment:
Q  761 tctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    ||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  28795946 tctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 28795879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 24772473 - 24772417
Alignment:
Q  153 tgtaactaattgccagttaaggcccttggtctatgttcagtagtagagagagacatc 209  Q
    ||||||||||  ||||| ||||||||||||||||||||| || ||||||| ||||||    
T  24772473 tgtaactaatcaccagtcaaggcccttggtctatgttcaatactagagagggacatc 24772417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 755 - 826
Target Start/End: Complemental strand, 26626733 - 26626659
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtattg 826  Q
    |||| |||||||||||||| |||||  ||||||||||||||||   | |||| ||| ||||||||||||||||||    
T  26626733 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtattg 26626659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 755 - 826
Target Start/End: Complemental strand, 26732710 - 26732636
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtattg 826  Q
    |||| |||||||||||||| |||||  ||||||||||||||||   | |||| ||| ||||||||||||||||||    
T  26732710 tctgtctctgaaactcccatttccaccaatctttgctttttcagaggaggctcaaactgtgataatgaagtattg 26732636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 743 - 795
Target Start/End: Complemental strand, 27078867 - 27078815
Alignment:
Q  743 tcatcctcctcctctgcctctgaaactcccacttccataaatctttgcttttt 795  Q
    |||||||||||||||| ||| ||||||||||||||||  |||| |||||||||    
T  27078867 tcatcctcctcctctgtctcggaaactcccacttccaccaatccttgcttttt 27078815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 656 - 698
Target Start/End: Original strand, 27703284 - 27703326
Alignment:
Q  656 gttaactttatgatggacctaaaccgaggaatgtaccccacat 698  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||    
T  27703284 gttaactttatgatggagctagaccaaggaatgtaccccacat 27703326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 754 - 826
Target Start/End: Complemental strand, 26953205 - 26953130
Alignment:
Q  754 ctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtattg 826  Q
    ||||| |||||||||||||||||| | |||||| ||||||||||   | |||| |||||| |||||| ||||||||    
T  26953205 ctctgtctctgaaactcccacttcaacaaatctatgctttttcagaggaggctcaaattgcgataataaagtattg 26953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 755 - 847
Target Start/End: Original strand, 18652126 - 18652218
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttcag---gggctgaaattgtgataatgaagtattgagaagatattcatctaatttt 847  Q
    |||| |||||||||||||||||||| |||||| |||||||||||    || ||||||||||||||||||| ||||   ||||||||||||||||||    
T  18652126 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaagcattg---agatattcatctaatttt 18652218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 755 - 847
Target Start/End: Original strand, 18686224 - 18686316
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttcag---gggctgaaattgtgataatgaagtattgagaagatattcatctaatttt 847  Q
    |||| |||||||||||||||||||| |||||| |||||||||||    || ||||||||||||||||||| ||||   ||||||||||||||||||    
T  18686224 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgaaggatgaaattgtgataatgaagcattg---agatattcatctaatttt 18686316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 755 - 847
Target Start/End: Original strand, 18720714 - 18720806
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttcag---gggctgaaattgtgataatgaagtattgagaagatattcatctaatttt 847  Q
    |||| |||||||||||||||||||| |||||| |||||||||||    || ||||||||||||||||||| ||||   ||||||||||||||||||    
T  18720714 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaagcattg---agatattcatctaatttt 18720806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 755 - 847
Target Start/End: Original strand, 18728150 - 18728242
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttcag---gggctgaaattgtgataatgaagtattgagaagatattcatctaatttt 847  Q
    |||| |||||||||||||||||||| |||||| |||||||||||    || ||||||||||||||||||| ||||   ||||||||||||||||||    
T  18728150 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaagcattg---agatattcatctaatttt 18728242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 760 - 845
Target Start/End: Original strand, 18696035 - 18696120
Alignment:
Q  760 ctctgaaactcccacttccataaatctttgctttttcag---gggctgaaattgtgataatgaagtattgagaagatattcatctaatt 845  Q
    |||||||||||| |||||||||||||| |||||||||||    || ||||||||||||||||||| ||||   ||||||||||||||||    
T  18696035 ctctgaaactccgacttccataaatctatgctttttcagagtaggatgaaattgtgataatgaagcattg---agatattcatctaatt 18696120  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 755 - 829
Target Start/End: Original strand, 18676184 - 18676261
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttcag---gggctgaaattgtgataatgaagtattgaga 829  Q
    |||| |||||||||||||||||||| |||||| |||||||||||    || ||||||||||||||||||| |||||||    
T  18676184 tctgtctctgaaactcccacttccacaaatctatgctttttcagcgtaggatgaaattgtgataatgaagcattgaga 18676261  T

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Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 624 - 698
Target Start/End: Complemental strand, 63462 - 63388
Alignment:
Q  624 aatgttgaaattgagagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtaccccacat 698  Q
    |||||||| |||||||||||||||| ||  ||||||||||||||||| ||||| ||| |||||||||||| ||||    
T  63462 aatgttgagattgagagaataacaacaaagcggttaactttatgatgaacctagaccaaggaatgtacccaacat 63388  T

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Target: scaffold0349 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 749 - 825
Target Start/End: Complemental strand, 16805 - 16726
Alignment:
Q  749 tcctcctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| |   | |||| |||||||||||||||||||||    
T  16805 tcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagaggaggctcaaattgtgataatgaagtatt 16726  T

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Target: scaffold0349; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 664
Target Start/End: Complemental strand, 16908 - 16852
Alignment:
Q  608 caaagcacaaacctgcaatgttgaaattgagagaataacaagaagacggttaacttt 664  Q
    ||||||||||||||| | | |||| ||||||||||||||||||||||| ||||||||    
T  16908 caaagcacaaacctgtattcttgagattgagagaataacaagaagacgattaacttt 16852  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 17988740 - 17988807
Alignment:
Q  451 cataaaacattaaaatacattatccgaggttggcctccataatttacatgtacttctaaaatggtatt 518  Q
    |||||||| || ||||||||||||| | ||||||||||| |||||||||| ||||||| |||||||||    
T  17988740 cataaaacgttcaaatacattatccaaagttggcctccagaatttacatgaacttctacaatggtatt 17988807  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 637 - 695
Target Start/End: Original strand, 29270329 - 29270387
Alignment:
Q  637 agagaataacaagaagacggttaactttatgatggacctaaaccgaggaatgtacccca 695  Q
    |||||||||||||||||||||||||||||| ||||||||| ||  ||| ||||||||||    
T  29270329 agagaataacaagaagacggttaactttataatggacctagactaaggtatgtacccca 29270387  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 749 - 825
Target Start/End: Original strand, 29270443 - 29270522
Alignment:
Q  749 tcctcctctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    |||||||||| ||||||||||||||||||||  |||||||||||||| |   | |||  |||||||||||||||||||||    
T  29270443 tcctcctctgtctctgaaactcccacttccaccaatctttgcttttttagaggaggcacaaattgtgataatgaagtatt 29270522  T

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Target: scaffold0419 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 755 - 825
Target Start/End: Complemental strand, 11078 - 11005
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    |||| |||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  11078 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 11005  T

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Target: scaffold0277 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 755 - 825
Target Start/End: Original strand, 10265 - 10338
Alignment:
Q  755 tctgcctctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    |||| |||||||||| |||||||||  ||||||||||||||||   | |||| |||||||||||||||||||||    
T  10265 tctgtctctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtgataatgaagtatt 10338  T

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Target: scaffold0277; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 761 - 825
Target Start/End: Original strand, 1311 - 1378
Alignment:
Q  761 tctgaaactcccacttccataaatctttgctttttca---ggggctgaaattgtgataatgaagtatt 825  Q
    ||||||||| |||||||||  ||||||||||||||||   | |||| ||||||| |||||||||||||    
T  1311 tctgaaactaccacttccaccaatctttgctttttcagaggaggctcaaattgtaataatgaagtatt 1378  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 804 - 847
Target Start/End: Complemental strand, 26139555 - 26139515
Alignment:
Q  804 gaaattgtgataatgaagtattgagaagatattcatctaatttt 847  Q
    |||||||||||||||||||||||   ||||||||||||||||||    
T  26139555 gaaattgtgataatgaagtattg---agatattcatctaatttt 26139515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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