View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_20 (Length: 359)
Name: NF11006_low_20
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_20 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 348
Target Start/End: Original strand, 6645918 - 6646248
Alignment:
| Q |
17 |
aaagtctttctatagttgatcaaatttttgttactatgttttttatcattcttttgaatatagcggttttactgtcttacaaacaatcccatatcctctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6645918 |
aaagtctttctatagttgatcaaatttttgttactatgtttt-tatcattcttttgaatatagcggttttactgtcttacaaacaatcccatatcctctt |
6646016 |
T |
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| Q |
117 |
cacaaggagaatcttcattagagtcattatcctctggaactgaagaggttgccttggacaaagaggcttttaatgcggtagatttcttctttttcttttt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6646017 |
cacaaggagaatcttcattagagtcattatcctctggaactgaagaggttgccttggacaaagaggcttttaatgcggtagatttcttctttttcttctt |
6646116 |
T |
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| Q |
217 |
aacactttcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaaatatggcattgatgtctagagtggggagattttgagac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
6646117 |
aacactttcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaattatggcattgatgtctagagtgtggagattttgagac |
6646216 |
T |
|
| Q |
317 |
tccttgatggtcttcacctttggcttcctctc |
348 |
Q |
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|||||||||||| ||||||||||||||||||| |
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| T |
6646217 |
tccttgatggtcgtcacctttggcttcctctc |
6646248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 4500594 - 4500436
Alignment:
| Q |
168 |
ccttggacaaagaggcttttaatgcggtagatttcttctttttctttttaacactttcctcactagctttcaaccttgtaatttaatgatcatgctcctt |
267 |
Q |
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| T |
4500594 |
ccttggaagaagaggcttttaatgcgatgaacttcttctccttcttcttaacatttttctcactaactttcaaccttgtcatttcatgctcatgttcctt |
4500495 |
T |
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| Q |
268 |
gagctttccaaatatggcattgatgtctagagtggggagattttgagactccttgatgg |
326 |
Q |
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| T |
4500494 |
gagctttccaaataagacggtgatgtctagagtgttgagatttcgagactccttgatgg |
4500436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 339
Target Start/End: Complemental strand, 8837706 - 8837431
Alignment:
| Q |
63 |
cattcttttgaatatagcggttttactgtcttacaaacaatcccatatcctcttcacaaggagaatcttcattagagtcattatcctctggaactgaaga |
162 |
Q |
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| T |
8837706 |
cattctttttaacatagcgtttgtatcgtgttacaaacaacctcagttcgtcttcactaggtgaatcttcattagagtcaatatcctcttgaacccaaga |
8837607 |
T |
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| Q |
163 |
ggttgccttggacaaagaggcttttaatgcggtagatttcttctttttctttttaacactttcctcactagctttcaaccttgtaatttaatgatcatgc |
262 |
Q |
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||| |||||||| ||| | | ||||| || | || ||||||| ||||| | ||||||||| || || |||| |||||||| |||| || ||||| |
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| T |
8837606 |
ggtcaccttggacgaagtgtcctttaacacgattgacttcttctccttcttctaaacactttcttcgcttactttaaaccttgtgattttctgctcatgt |
8837507 |
T |
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| Q |
263 |
tccttgagctttccaaatatggcattgatgtctagagtggggagattttgagactccttgatggtcttcacctttgg |
339 |
Q |
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| T |
8837506 |
tccttgagatttccatataaggtggtgatctctagattgttgaga-tttgagactccttgatggcactcacctttgg |
8837431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 207
Target Start/End: Original strand, 9653116 - 9653285
Alignment:
| Q |
38 |
aaatttttgttactatgttttttatcattcttttgaatatagcggttttactgtcttacaaacaatcccatatcctcttcacaaggagaatcttcattag |
137 |
Q |
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||||||||||||||||| ||| | ||||||||||| ||||| |||| || ||| |||||||||||||| |||| || | ||||||||||||| || |
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| T |
9653116 |
aaatttttgttactatgctttagaccattcttttgagtatagaggttgtatcgtcgcacaaacaatcccatttccttatccctaggagaatcttcactaa |
9653215 |
T |
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| Q |
138 |
agtcattatcctctggaactgaagaggttgccttggacaaagaggcttttaatgcggtagatttcttctt |
207 |
Q |
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| ||| ||||||| |||| ||| ||||||||||||||||| | || ||||||||| | | ||||||||| |
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| T |
9653216 |
aatcactatcctcatgaaccgaaaaggttgccttggacaaacatgcctttaatgcgatgggtttcttctt |
9653285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 281
Target Start/End: Complemental strand, 5897 - 5679
Alignment:
| Q |
63 |
cattcttttgaatatagcggttttactgtcttacaaacaatcccatatcctcttcacaaggagaatcttcattagagtcattatcctctggaactgaaga |
162 |
Q |
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||||| ||||| |||| |||| ||| |||||||||||||||| || ||| ||||| ||||||||||| |||||||||| |||| ||| |||| |||| |
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| T |
5897 |
cattcctttgagcatagtggttgtaccgtcttacaaacaatccaatcccctgttcactaggagaatctttattagagtcactatcatcttgaaccaaaga |
5798 |
T |
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| Q |
163 |
ggttgccttggacaaagaggcttttaatgcggtagatttcttctttttctttttaacactttcctcactagctttcaaccttgtaatttaatgatcatgc |
262 |
Q |
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|||| |||| || ||||||| ||||| ||| | ||||||||||| | || | || | ||| |||| || ||||||| |||| |||| ||| ||| | |
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| T |
5797 |
ggtttcctttgattaagaggcatttaacgcgatgaatttcttctttgttttctaaatatttttctcattatctttcaaaattgttatttcatgctcacac |
5698 |
T |
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| Q |
263 |
tccttgagctttccaaata |
281 |
Q |
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||||||| ||||||||||| |
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| T |
5697 |
tccttgatctttccaaata |
5679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 13119934 - 13119850
Alignment:
| Q |
197 |
gatttcttctttttctttttaacactttcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaaata |
281 |
Q |
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|||||||||| |||||| |||||| |||||||| ||| |||||| |||| |||| ||| ||||| | ||||||||||||||||| |
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| T |
13119934 |
gatttcttctctttcttattaacattttcctcattagatttcaatattgtgatttcatgctcatgttacttgagctttccaaata |
13119850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 21845018 - 21845120
Alignment:
| Q |
224 |
tcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaaatatggcattgatgtctagagtggggagattttgagactccttga |
323 |
Q |
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||||||||| |||||||||||| |||| ||| ||||| ||||||||||||||||||| | ||||| ||| |||| |||||||| ||| ||||||| |
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| T |
21845018 |
tcctcactaactttcaaccttgcgatttcatgctcatgttccttgagctttccaaataagatggtgatgcctatagtgttgagattttcagagtccttga |
21845117 |
T |
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| Q |
324 |
tgg |
326 |
Q |
| |
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||| |
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| T |
21845118 |
tgg |
21845120 |
T |
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