View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_21 (Length: 352)
Name: NF11006_low_21
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 38808470 - 38808804
Alignment:
| Q |
1 |
caatacatgattccaaaaacctgatatgatgctagcttctggacagatgataatataatatttttgtttaaggaattgtttacttggttatggtaccagt |
100 |
Q |
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| T |
38808470 |
caatacatgattccaaaaacatgatatgatgctagcttctggacagatgataatataatatttttgtttaaggaattgtttacttggttatggtaccagt |
38808569 |
T |
|
| Q |
101 |
ttgtctcnnnnnnncaacttttccttttgtttccttctactttcaagttccaacaattgtagttgactgtaacaaaatatcataattagttggaaattgt |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
38808570 |
ttgtctctttttttcaacttttccttttgtttccttctactttcaagttccaacaattgtagttgactgtaacaaaagatcataattagttggaaattgt |
38808669 |
T |
|
| Q |
201 |
tattgtccacggaattttctattcagcacatacattcaaggaagattatcttccttcaatttggtttgtgctcaatg--ctcgttctatattttggcaaa |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38808670 |
tattgtccacggaattttctattcagcacatacattcaaggaagattatcttccttcaatttggtttgtgctcaatgctctcgttctatattttggcaaa |
38808769 |
T |
|
| Q |
299 |
ccatgctgattctttgttagaatacactgaggacc |
333 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
38808770 |
ccatgctgattctttgttagaatacactgaggacc |
38808804 |
T |
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