View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_22 (Length: 352)
Name: NF11006_low_22
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 338
Target Start/End: Original strand, 13799781 - 13800109
Alignment:
| Q |
10 |
cagagataagatatataactaataacttgaacaacaatgaaatgttgcatagaacagacatacacatattctatgatgactaacaatgtctttttctttc |
109 |
Q |
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| T |
13799781 |
cagagataagatatataactaataacttgaacaacaatgaaatgttgcatagaacagacatacacatattctatgatgactaacaatgtc-ttgtctttc |
13799879 |
T |
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| Q |
110 |
cttatttattcatagttcagacagaaaatacacac-aactgtagtaactgcagctgctattaaataattaataacagttgttataagtacgtatccttac |
208 |
Q |
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| T |
13799880 |
cttatttattcatagttcagacagaaaatacacacaaactgtagtaactgcagctgctattaaataattaataacagttgttataagtacatatccttac |
13799979 |
T |
|
| Q |
209 |
ttgctcnnnnnnnngtacgtatccttacttcctcattttgtaaaaactgggtccactccatgtgcattttcattgtatgaagtatacttgccttgaagtg |
308 |
Q |
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| T |
13799980 |
ttgctcaaaaaaaagtacgtatccttacttcctcattttgtaaaaactgggtccactccatgtgcattttcattgtatgaagtatacttgccttgaagtg |
13800079 |
T |
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| Q |
309 |
atcataatcaggatcaacgatggaatcaac |
338 |
Q |
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| T |
13800080 |
atcataatcaggatcaacgatggaatcaac |
13800109 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 318
Target Start/End: Complemental strand, 100948 - 100860
Alignment:
| Q |
230 |
tccttacttcctcattttgtaaaaactgggtccactccatgtgcattttcattgtatgaagtatacttgccttgaagtgatcataatca |
318 |
Q |
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| T |
100948 |
tccttacttcttcattttgtaaatattggatccgctcgatgtgcatttccatagtatgaagtattcttgctttgaagggaccataatca |
100860 |
T |
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