View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_24 (Length: 341)
Name: NF11006_low_24
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 18190148 - 18189824
Alignment:
| Q |
1 |
caaattagcaattgatgaggcttatagccattttgctctaattttggatcgtgatattttttctaatcatcttgataaaatctttgtagaaagagaggga |
100 |
Q |
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| T |
18190148 |
caaattagcaattgatgaggcttatagccattttgctctaattttggatcgtgatattttttctaatcatcttgataaaatctttgtagaaagagaggga |
18190049 |
T |
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| Q |
101 |
tgtgttttctttgtagaaaggagcatatcaagcctaaacaaagtgtttatgtgcctaaaatcaaggatcaagagataataaggcaatagtagaggaagag |
200 |
Q |
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| T |
18190048 |
tgtgttttctttgtagaaaggagcatatcaagcctaaacaaagtgtttatgtgcctaaaatcaaggatcaagagataataaggcaatagtagaggaagag |
18189949 |
T |
|
| Q |
201 |
aaagtaaatggttcgtctccggaagatagaattctggttggaagcacaattgtgaaccggttagcagtaaacttctggttgttggttataagtaccggat |
300 |
Q |
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| T |
18189948 |
aaagtaaatggttcgtctccggaagatagaattctggttggaagcacaattgtgaaccggttagcagtaaacttctggttgttggttataagtcccgggt |
18189849 |
T |
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| Q |
301 |
tgactctgttgctgagacaacaaac |
325 |
Q |
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| T |
18189848 |
tgactctgttgctgagacaacaaac |
18189824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 59 - 293
Target Start/End: Complemental strand, 18195489 - 18195257
Alignment:
| Q |
59 |
ttttctaatcatcttgataaaatctttgtagaaagagagggatgtgttttctttgtagaaaggagcatatcaagcctaaacaaagtgtttatgtgcctaa |
158 |
Q |
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| T |
18195489 |
ttttctaatcatcttgatcaaatctttatagaaagagagggatgtgtgttctttgtagaaaggagtctatcaagcctaaacaaagtgtttatgtgccaaa |
18195390 |
T |
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| Q |
159 |
aatcaaggatcaagagataataaggcaatagtagaggaagagaaagtaaatggttcgtctccggaagatagaattctggttggaagcacaattgtgaacc |
258 |
Q |
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| T |
18195389 |
aaccaaggatc--gatatagaaaggcaatactagagcaagagaaagtaaatgattcttcccagtaaaatagaattctggttgaagggacaattgtgaacc |
18195292 |
T |
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| Q |
259 |
ggttagcagtaaacttctggttgttggttataagt |
293 |
Q |
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||||| || ||| | ||||||||||||| |||||| |
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| T |
18195291 |
ggttaacaataagcctctggttgttggtgataagt |
18195257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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