View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_25 (Length: 336)
Name: NF11006_low_25
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 1781652 - 1781400
Alignment:
| Q |
1 |
ctccccggcgtcggtgtctcatcccatctattcctcctcccaggagtagcatcaactactctcccaggagttggagtagcatcccatctccccggtgtca |
100 |
Q |
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| T |
1781652 |
ctccccggcgtcggtgtctcatcccatctattcctcctcccaggagtagcatcaactactctcccgggagttggagtagcatcccatctacccggtgtca |
1781553 |
T |
|
| Q |
101 |
ttgcattcgaatccggtgcatcccaatcagaagtcttagcctttttcacaccaccttcctccagattctgattctgatcccatctattcctcctcttctg |
200 |
Q |
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| T |
1781552 |
tcgcattcgaatccggtgcatcccaatcagaagtcttagactttttcacaccaccttcctccagattctgattctgatcccatctattcctcctcttctg |
1781453 |
T |
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| Q |
201 |
ctgttgattctgctgagatttttccttctcagccacaggtgcagccttaccag |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1781452 |
ctgttgattctgctgagatttttccttctcagccacgggtgcagccttaccag |
1781400 |
T |
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