View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_26 (Length: 328)
Name: NF11006_low_26
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 31444837 - 31444538
Alignment:
| Q |
14 |
agggctgtcctgaatgacacatatgggtttgaggacactaaatccggattgtttatcaaatcttgattaatggctctacctgctggaccataattgtagt |
113 |
Q |
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| T |
31444837 |
agggctgtcctgaatgacacagatgggtttgaggacactaaatccggattgtttatcaaatcttgattaatggctctaccggctggaccataattgtagt |
31444738 |
T |
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| Q |
114 |
tgttgtgataaaggatcaacatcccattagttcactaaacactcatatctataactggaaatcaacgttaattcattatgataagaaaaataaaataaca |
213 |
Q |
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| T |
31444737 |
tgctgtgataaaggatcaacatcccattagttcactaaacactcatatctataactagaaatcaatgttaattcattatgttaagaaaaataaaataaca |
31444638 |
T |
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| Q |
214 |
tggtttgatatttagatggcggtatggtttgaaatgctagaggcatgaagatgaaagaagcttactgagtgagttgaattggtcctctgccgtggtatct |
313 |
Q |
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| T |
31444637 |
tggtttgatatttagatgggggtatggtttgaaatgctagaggcatgaagatgaaagaagcttactgagtgagttgaattggtcctctgccgtagtatct |
31444538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 31434640 - 31434543
Alignment:
| Q |
16 |
ggctgtcctgaatgacacatatgggtttgaggacactaaatccggattgtttatcaaatcttgattaatggctctacctgctggaccataattgtagt |
113 |
Q |
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| T |
31434640 |
ggctgtcttgaatgatacagttgggtttgtggacactaaatccggattgtttatcaaatcttgattgatggcttttcccgcttgaccataattgtagt |
31434543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 31430513 - 31430378
Alignment:
| Q |
17 |
gctgtcctgaatgacacatatgggtttgaggacactaaatccggattgtttatcaaatcttgattaatggctctacctgctggaccataattgtagttgt |
116 |
Q |
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| T |
31430513 |
gctgtcttgaatgatacagttgggtttgtggagactagatccggattgtttatcaaatcttcattaatagctttacccgcttgaccgtaattgtaattgc |
31430414 |
T |
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| Q |
117 |
tgtgataaaggatcaacatcccattagttcactaaa |
152 |
Q |
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| T |
31430413 |
tgtgaacaagggtcaacgttgcattagtccactaaa |
31430378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 31429535 - 31429487
Alignment:
| Q |
265 |
tgaaagaagcttactgagtgagttgaattggtcctctgccgtggtatct |
313 |
Q |
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| T |
31429535 |
tgaaagaaacttactgagtgagttgaataggtcctctgccatagtatct |
31429487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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