View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_27 (Length: 328)
Name: NF11006_low_27
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 21 - 321
Target Start/End: Original strand, 30437649 - 30437952
Alignment:
| Q |
21 |
gtcgcaatgaatgcttctacgcaccaatccgacaacaccaacatcattgtcggttcagctctcatatttcacaaagcatacaaaattgcag---gtgtag |
117 |
Q |
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| T |
30437649 |
gtcgcaatgaatgcttctacgcaccaatccgacaacaccaacatcattgtcggttcagctctcatatttcacaaagcatacaaaattgcagaaggtgtag |
30437748 |
T |
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| Q |
118 |
agaattttgcaaattaaatgaagcagaggagtcacaactctttgttatcaatatctaatatctatgataaaatctatgtattatttgtttgcaatgaaat |
217 |
Q |
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| T |
30437749 |
agaattttgcaaattaaatgaagcagaggagtcacaactctttgttatcaatatctaatatctatgataaaatctatgtattatttgtttgcaatgaaat |
30437848 |
T |
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| Q |
218 |
tagtatttgcaggctgccaaacaagaaaaggaatcgaaacaacaaagctaaacaaacttcacagctactttgaattcagataacataattcttcctctgt |
317 |
Q |
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| T |
30437849 |
tagtatttgcaggctgccaaacaagaaaaggaatcgaaacaacaaagctaaacaaacttaacagctactttgaattcagataacaaaattcttcctctga |
30437948 |
T |
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| Q |
318 |
gctc |
321 |
Q |
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|||| |
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| T |
30437949 |
gctc |
30437952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 18472207 - 18471993
Alignment:
| Q |
25 |
caatgaatgcttctacgcaccaatccgacaacaccaacatcattgtcggttcagctctcatatttcacaaagcatacaaaattgcag---gtgtagagaa |
121 |
Q |
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| T |
18472207 |
caatgaatgtatccacgcatcagtccgacaacaccaacgtcactatcagctcagctcacatatttcacaaagcatacaaagt-gcagaatgtggggagca |
18472109 |
T |
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| Q |
122 |
tttt-gcaaattaaatgaagcagaggagtcacaactctttgttatcaatatctaatatctatgataaaatctatgtattatttgtttgcaatgaaattag |
220 |
Q |
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|||| |||||||||||||||||||| |||||| |||||||| |||||||| | ||| ||||||| | |||||||||||||||||| |||||| |
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| T |
18472108 |
ttttcgcaaattaaatgaagcagag---tcacaattctttgttctcaatatcca-------tgacaaaatctttatattatttgtttgcaatgcaattag |
18472019 |
T |
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| Q |
221 |
tatttgcaggctgccaaacaagaaaa |
246 |
Q |
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|||||||||||||||||||||||||| |
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| T |
18472018 |
tatttgcaggctgccaaacaagaaaa |
18471993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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