View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11006_low_29 (Length: 303)

Name: NF11006_low_29
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11006_low_29
NF11006_low_29
[»] chr3 (23 HSPs)
chr3 (1-290)||(2806841-2807130)
chr3 (22-290)||(2789938-2790206)
chr3 (27-290)||(2748578-2748832)
chr3 (132-290)||(2768649-2768807)
chr3 (122-290)||(2796941-2797109)
chr3 (122-290)||(2856200-2856368)
chr3 (122-287)||(2838990-2839155)
chr3 (4-290)||(5412487-5412764)
chr3 (122-290)||(2758794-2758962)
chr3 (137-290)||(2818137-2818290)
chr3 (227-284)||(22104280-22104337)
chr3 (132-209)||(2755705-2755782)
chr3 (227-284)||(21945190-21945247)
chr3 (227-284)||(22178974-22179031)
chr3 (221-290)||(22621766-22621835)
chr3 (227-290)||(21936704-21936767)
chr3 (244-290)||(3311133-3311179)
chr3 (244-290)||(3322732-3322778)
chr3 (227-284)||(30990130-30990187)
chr3 (221-287)||(3221954-3222020)
chr3 (221-287)||(3280736-3280802)
chr3 (227-284)||(22034083-22034140)
chr3 (227-284)||(22113946-22114003)
[»] scaffold0691 (1 HSPs)
scaffold0691 (22-290)||(6451-6710)
[»] chr1 (2 HSPs)
chr1 (215-290)||(34975062-34975137)
chr1 (215-290)||(34979720-34979795)


Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 2807130 - 2806841
Alignment:
Q  1 accgacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2807130 accgacaccttaatgtctcggatcttagatgctatatgatgacggggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatc 2807031  T
Q  101 caggaggactggattttgccatatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2807030 caggaggactggattttgccatatgcatcagccgatggtattcatcgatgatatcttcaatgcgaaatgatgcttcgcgcagctgctttacccaagttct 2806931  T
Q  201 aattccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2806930 aattccatcatttgtgtctgcttcatctgctgctcttctatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 2806841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 22 - 290
Target Start/End: Complemental strand, 2790206 - 2789938
Alignment:
Q  22 atcttagatgctatatgatgacgaggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgcca 121  Q
    |||| ||||||||| |||||| | ||||||||||||||||  ||||||||||||||| ||||| |||||  || |||||||| |||| |||||||||||     
T  2790206 atctcagatgctatctgatgatggggaatcaaagttttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccc 2790107  T
Q  122 tatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctac 221  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||| | ||||||||| ||||||||||| |||||||| || |||||| |    
T  2790106 tatgcatgagccgaaggtattcatcgatgatatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcattggtgtctgc 2790007  T
Q  222 ttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2790006 ttcatctgcagctcttatatctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 2789938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 290
Target Start/End: Complemental strand, 2748832 - 2748578
Alignment:
Q  27 agatgctatatgatgacgaggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgc 126  Q
    |||||||||||||||||| ||||||||||||||||   | ||||||||||||  || | |||||||   ||||| ||||||| |||      || |||||    
T  2748832 agatgctatatgatgacggggaatcaaagttttgatttgccttgcaatcttgccgactaaagatcc---gcatctaggaggattgg------ccctatgc 2748742  T
Q  127 atcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcat 226  Q
    || |||||| |||||||||| |||| |||||||||| ||||||||||||| | ||||||||| ||||||||||| ||||||||||| |||||| ||||||    
T  2748741 attagccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttagtgtctgcttcat 2748642  T
Q  227 ctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    | || || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2748641 ccgcagcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 2748578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 132 - 290
Target Start/End: Complemental strand, 2768807 - 2768649
Alignment:
Q  132 ccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcatctgct 231  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||| | ||||||||| ||||||||||| ||||||||||| |||||| ||||||| ||     
T  2768807 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttggtgtctgcttcatccgca 2768708  T
Q  232 gctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2768707 gcccttctgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 2768649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 2797109 - 2796941
Alignment:
Q  122 tatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctac 221  Q
    ||||||||||| || |||||||||| |||| |||||||||| ||||||||||||| | ||| ||||| ||||||||||| |||||||| || |||||       
T  2797109 tatgcatcagctgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagatgcttcacccaagttcttattccatcattggtgtcggt 2797010  T
Q  222 ttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    ||||||||| |||||| |||||||||||||||||||  ||||||||||||||||||||||| |||||||    
T  2797009 ttcatctgcagctcttgtatctgcatctttgaggaaaacttgaatgctctcaagttcatctgtgatgtc 2796941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 122 - 290
Target Start/End: Original strand, 2856200 - 2856368
Alignment:
Q  122 tatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctac 221  Q
    |||| |||| |||| |||||||||| |||| |||||||||| ||||||||||||| | ||||||||| ||||||||||| |||||||| ||  ||||| |    
T  2856200 tatgtatcaaccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcattgatgtctgc 2856299  T
Q  222 ttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    |||||| || || ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2856300 ttcatccgcagcccttatgtctgcatctttgaggaagacttgaatgctctcaagttcatctttgatgtc 2856368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 122 - 287
Target Start/End: Original strand, 2838990 - 2839155
Alignment:
Q  122 tatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctac 221  Q
    ||||||| || ||| |||||||||| |||| |||||||||| ||||||||||||| | ||||||||| ||||||||||| |||||||||||  ||||| |    
T  2838990 tatgcattagtcgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcagctgcttcacccaagttcttattccatcgttgatgtctgc 2839089  T
Q  222 ttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgat 287  Q
    |||||| || || ||||| |||||||||||||||||| || ||||| |||||||||||||||||||    
T  2839090 ttcatccgcagcccttctgtctgcatctttgaggaagactagaatgatctcaagttcatctttgat 2839155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 290
Target Start/End: Complemental strand, 5412764 - 5412487
Alignment:
Q  4 gacaccttaatgtctcggatcttagatgctatatgatgacgaggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccag 103  Q
    |||| |||||||||  | |||| ||||||||| |||||| | |||||||||||||||| || ||||||||||||| ||| | ||||||    |||||||     
T  5412764 gacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaaagttttgatcaagcttgcaatcttgcagactaaagatct---gcatccaa 5412668  T
Q  104 gaggactggattttgccatatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaat 203  Q
    ||||| ||       || ||||||| |||||||||||||| || |||| |||||||||| ||||||||||||| | ||  ||||| ||||| ||||| ||    
T  5412667 gaggattga------ccctatgcattagccgatggtattcgtcaatgacatcttcaatgcgaaatgatgcttctctcatatgcttcacccatgttcttat 5412574  T
Q  204 tccatcgtttgtgtctacttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    |||||| || | |||  |||||||||| || ||| | ||||||||||||||||||| ||||||| | || |||||||||||||||||    
T  5412573 tccatcattggcgtccgcttcatctgcagcccttttgtctgcatctttgaggaaggattgaatgatttctagttcatctttgatgtc 5412487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 2758962 - 2758794
Alignment:
Q  122 tatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctac 221  Q
    |||| ||||||||| ||||||| || || |||||||||||| |||| |||||||| | ||  ||||| ||||| ||||| ||||| || || || ||| |    
T  2758962 tatggatcagccgaaggtattcgtcaattatatcttcaatgcgaaacgatgcttctctcatatgcttcacccatgttcttattccttcattggtttctgc 2758863  T
Q  222 ttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  2758862 ttcatctgctgcccttctatctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtc 2758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 137 - 290
Target Start/End: Complemental strand, 2818290 - 2818137
Alignment:
Q  137 ggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctacttcatctgctgctct 236  Q
    |||||||||| |||| |||||||||| |||||||||| || | ||  ||||| ||||| ||||| |||||||| || | |||  ||||||||||||| ||    
T  2818290 ggtattcatcaatgacatcttcaatgcgaaatgatgcatctctcacttgcttcacccatgttcttattccatcattggcgtccgcttcatctgctgccct 2818191  T
Q  237 tctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    |||||||||||||||||||||| |||| ||||| || |||||||||||||||||    
T  2818190 tctatctgcatctttgaggaagacttggatgctttctagttcatctttgatgtc 2818137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 22104337 - 22104280
Alignment:
Q  227 ctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatcttt 284  Q
    |||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||||||    
T  22104337 ctgcagctcttctatcagcatctttgaggaaggcttggatgctttcaagttcatcttt 22104280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 2755782 - 2755705
Alignment:
Q  132 ccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatc 209  Q
    |||| |||||||||| |||| |||||||||| ||||||||||||| | ||  ||||| ||||||||||| ||||||||    
T  2755782 ccgaaggtattcatcaatgacatcttcaatgcgaaatgatgcttctctcatatgcttcacccaagttcttattccatc 2755705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 21945247 - 21945190
Alignment:
Q  227 ctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatcttt 284  Q
    ||||||||||| |||| ||||| |||||||| ||||||||||| ||||||||||||||    
T  21945247 ctgctgctcttttatcagcatccttgaggaatgcttgaatgctttcaagttcatcttt 21945190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 22179031 - 22178974
Alignment:
Q  227 ctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatcttt 284  Q
    |||| ||||||||||| |||||||||||||||||||| ||||| |||| |||||||||    
T  22179031 ctgcagctcttctatcagcatctttgaggaaggcttggatgctttcaaattcatcttt 22178974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 22621766 - 22621835
Alignment:
Q  221 cttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    ||||| |||| ||||||||||| ||||| || ||||||||||| ||||| |||||||||||||| |||||    
T  22621766 cttcacctgcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtc 22621835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 21936767 - 21936704
Alignment:
Q  227 ctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    |||| ||||||||||| ||||| || ||||||||||| ||||| |||||||||||||| |||||    
T  21936767 ctgcagctcttctatcagcatccttaaggaaggcttggatgctttcaagttcatctttaatgtc 21936704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 3311133 - 3311179
Alignment:
Q  244 gcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  3311133 gcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3311179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 3322732 - 3322778
Alignment:
Q  244 gcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||||    
T  3322732 gcatccttgaggaaggcttggatgctctcaaggtcatctttgatgtc 3322778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 30990130 - 30990187
Alignment:
Q  227 ctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatcttt 284  Q
    |||| |||||| |||| |||||||| || |||||||||||||| ||||||||||||||    
T  30990130 ctgcagctcttttatcagcatctttaagaaaggcttgaatgctttcaagttcatcttt 30990187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 3221954 - 3222020
Alignment:
Q  221 cttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgat 287  Q
    ||||||| || |||||| |||||||||| ||||| || ||||  |||||||||||||||| ||||||    
T  3221954 cttcatcagcagctcttgtatctgcatccttgagaaaagctttgatgctctcaagttcatgtttgat 3222020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 3280736 - 3280802
Alignment:
Q  221 cttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgat 287  Q
    ||||||| || |||||| |||||||||| ||||| || ||||  |||||||||||||||| ||||||    
T  3280736 cttcatcagcagctcttgtatctgcatccttgagaaaagctttgatgctctcaagttcatgtttgat 3280802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 22034140 - 22034083
Alignment:
Q  227 ctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatcttt 284  Q
    ||||||||||| |||| ||||| || ||||| ||||||||||| || |||||||||||    
T  22034140 ctgctgctcttttatcagcatccttcaggaatgcttgaatgctttccagttcatcttt 22034083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 22114003 - 22113946
Alignment:
Q  227 ctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatcttt 284  Q
    ||||||||||| |||| ||||| || ||||| ||||||||||| || |||||||||||    
T  22114003 ctgctgctcttttatcagcatccttcaggaatgcttgaatgctttccagttcatcttt 22113946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 22 - 290
Target Start/End: Original strand, 6451 - 6710
Alignment:
Q  22 atcttagatgctatatgatgacgaggaatcaaagttttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgcca 121  Q
    |||| ||||||||| |||||  ||| ||||||||||||||  |||||| |||||||| ||| | | |||||   ||||||||||||  |||      ||     
T  6451 atctcagatgctatctgatgctgagaaatcaaagttttgattaggcttacaatcttgcagactaatgatcc---gcatccaggagggttgg------ccc 6541  T
Q  122 tatgcatcagccgatggtattcatcgatgatatcttcaatgtgaaatgatgcttcgcgcagctgctttacccaagttctaattccatcgtttgtgtctac 221  Q
    |||| ||||||||| |||||||||| || | |||||||||| ||||||||||||| | ||  ||||| ||||||||||| |||||||| || |||||| |    
T  6542 tatggatcagccgaaggtattcatcaataacatcttcaatgcgaaatgatgcttccctcatatgcttcacccaagttcttattccatcattagtgtctgc 6641  T
Q  222 ttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    ||||||||| ||  |||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||    
T  6642 ttcatctgcagcctttctgtctgcatctttgaggaagatttgaatgctttcaagttcatctttgatgtc 6710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 34975137 - 34975062
Alignment:
Q  215 tgtctacttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    ||||| ||||| |||| ||||||||||| | |||||||||||||||||||||||| || ||||||| ||| |||||    
T  34975137 tgtctccttcagctgcagctcttctatcagaatctttgaggaaggcttgaatgctttcgagttcatatttaatgtc 34975062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 34979795 - 34979720
Alignment:
Q  215 tgtctacttcatctgctgctcttctatctgcatctttgaggaaggcttgaatgctctcaagttcatctttgatgtc 290  Q
    ||||| ||||| |||| ||||||||||| |||||||| |||||||||| |||||| || ||||||| ||| |||||    
T  34979795 tgtctccttcagctgcagctcttctatcagcatctttaaggaaggcttcaatgctttcgagttcatatttaatgtc 34979720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University