View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11006_low_3 (Length: 783)
Name: NF11006_low_3
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-175; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 435 - 774
Target Start/End: Original strand, 39537049 - 39537388
Alignment:
| Q |
435 |
gatagcttaatacttatttcattcattttgctattaaattaggcacttttccaagcaggcagaaatttggtcaaagaacccttgttcatggctctggaca |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39537049 |
gatagcttaatacttatttcattcattttgctattaaattaggcacttttccaagcaggcagaaatttggtgaaagaacccttgttcatggctctggaca |
39537148 |
T |
|
| Q |
535 |
gagatagctcagtttgttaaaaggaatacgtcaattgactttatgagtttgaaagtaacaatgctttgctgtctttttggtattttactgtgcaaatcgc |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39537149 |
gagatagctcagtttgttaaaaggaatacgtcaattgactttatgagtttgaaagtaacaatgctttgctgtctttttggtattttactgtgcaaattgc |
39537248 |
T |
|
| Q |
635 |
ccttcaaatttttgctgtctactgaggtagtttacccatctttgtaaatttcgctgttttggtttttagttttggctcatacaaaggctattgttcaacc |
734 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39537249 |
ccttcaaatttttgctgtctactgaggtagtttacctatctttgtaaatttccttgttttggttttttgttttggctcatacaaaggctattgttcaact |
39537348 |
T |
|
| Q |
735 |
ctctttcaatttttcgtcacttttcttaactttctctgct |
774 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39537349 |
ctctttcaatttttcgtcacttttcttaactttctctgct |
39537388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 39536567 - 39536818
Alignment:
| Q |
1 |
aaagagataccagttgcagggaaggggaaagaagaaagagctgaacgtgcctcactagtaatgaatacaggatcatgatatacctgctgcagaaaacgga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39536567 |
aaagagataccagttgcagggaagggaaaagaagaaagagctgaacgtgcctcactagtaatgaatgcaggatcatgatatacctgctgcagaaaacgga |
39536666 |
T |
|
| Q |
101 |
tttgcaccaattcgatgttgatttgcagggcacacatcagatcaatcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39536667 |
tttgcaccaattcgatgttgatttgcagggcacacatcagatcaatcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcat |
39536766 |
T |
|
| Q |
201 |
gtatttacttgtagatcaaaatagaggtagtcaagtatggatagtcgattat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39536767 |
gtatttacttgtagatcaaaatagaggtagtcaagtatggatagtcgattat |
39536818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 249 - 388
Target Start/End: Original strand, 39536863 - 39537002
Alignment:
| Q |
249 |
ttatcacaagactcttgtcaataattactcaaagtcttttacatattgtatgtttatcgttcaacaaagcttttaatttggttgactctctaaacatcta |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39536863 |
ttatcacaagactcttgtcaataattactcaaagtcttttacatattttatgtttatcgttcaacaaagcttttaatttggttgactctctaaacatcta |
39536962 |
T |
|
| Q |
349 |
tcctcaacactatctttaggtttggatgactaatctaata |
388 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39536963 |
tcctcaacactatctttaggtttggatgactaatctaata |
39537002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 2362093 - 2362200
Alignment:
| Q |
128 |
gggcacacatcagatcaatcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcatgtatttacttgtagatcaaaatagagg |
227 |
Q |
| |
|
|||| |||||||| |||||||||||| |||| | || ||||||||| ||| ||| |||||||||||| |||| |||||| |||||||| | | ||||||| |
|
|
| T |
2362093 |
gggctcacatcaggtcaatcaagctactgtttgcagaactggttctgtaatgcagattgaaggtatatatcaagtattttcttgtagagc-acatagagg |
2362191 |
T |
|
| Q |
228 |
tagtcaagt |
236 |
Q |
| |
|
|||| |||| |
|
|
| T |
2362192 |
tagttaagt |
2362200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 2364350 - 2364418
Alignment:
| Q |
135 |
catcagatcaatcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcatgta |
203 |
Q |
| |
|
|||||| |||||||||| ||||||||||| ||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
2364350 |
catcaggtcaatcaagcaagtgttagaagaactggttctgtgtagcagattgaaggtataaatcatgta |
2364418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 2462148 - 2462093
Alignment:
| Q |
2 |
aagagataccagttgcagggaaggggaaagaagaaagagctgaacgtgcctcacta |
57 |
Q |
| |
|
||||| |||||||||||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
2462148 |
aagaggtaccagttgcagggaatggagaagaagaaagagctgaacatgcctcacta |
2462093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 2466215 - 2466149
Alignment:
| Q |
1 |
aaagagataccagttgcagggaaggggaaagaagaaagagctgaacgtgcctcactagtaatgaata |
67 |
Q |
| |
|
|||||| ||||||||||| |||| ||| |||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
2466215 |
aaagaggtaccagttgcaaggaatggggaagatgaaagagctgaacgtgcctaactagagatgaata |
2466149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 2489796 - 2489699
Alignment:
| Q |
145 |
atcaagctagtgttagaaggactggttctttaaagcaaattgaaggtataaatcatgtat-ttacttgtagatcaaaatagaggtagtcaagtatggat |
242 |
Q |
| |
|
|||||||| |||||| ||| |||| |||| | ||||| |||||||||||||||||| ||| || ||||||| | ||| ||||||||||||||| |||| |
|
|
| T |
2489796 |
atcaagcttgtgttaaaagaactgattctgtgaagcagattgaaggtataaatcatatatattttttgtagaac-aaacagaggtagtcaagtaaggat |
2489699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 2544053 - 2543996
Alignment:
| Q |
187 |
aaggtataaatcatgtatttacttgtagatcaaaatagaggtagtcaagtatggatagt |
245 |
Q |
| |
|
|||||||||||||||||||| ||| |||| | || ||||||||||||||||||| |||| |
|
|
| T |
2544053 |
aaggtataaatcatgtattttcttatagaac-aagtagaggtagtcaagtatgggtagt |
2543996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University