View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_32 (Length: 281)
Name: NF11006_low_32
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 48044438 - 48044176
Alignment:
| Q |
1 |
aagcatcttaagcttgggtctcacacatgacacaacctaattgatcaactgcattctcacaaggggtcaaatgtttgtcgaacaggaaaggttggagaaa |
100 |
Q |
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| T |
48044438 |
aagcatcttaagcttgggtctcacacatgacacaacctaattgatcaactgcattctcacaaggggtcaaatgtttgtcgaacaggaaaggttggagaaa |
48044339 |
T |
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| Q |
101 |
cataggtcccatgaacaatcttgtttcaagcctcaccttactagctattaattgactcggagaattattcaaatcaaattagcgtgacctatctccctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
48044338 |
cataggtcccatgaacaatcttgtttcaagcctcaccttactagctattaattgactctgagaattattcaaatcaaataagcgtgacctatctccctct |
48044239 |
T |
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| Q |
201 |
ctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatg |
263 |
Q |
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| T |
48044238 |
ctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatg |
48044176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 263
Target Start/End: Complemental strand, 48051958 - 48051871
Alignment:
| Q |
176 |
aaattagcgtgacctatctccctctctatgttgatgtggcattttgccatgttatttaccagcaaataaaatgaataaaagagtgatg |
263 |
Q |
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|||||||| ||| |||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
48051958 |
aaattagcatgatctatctccctctatatgctgatgtggcacactgccatgttattttccagcaaataaaatgaataaaagagtgatg |
48051871 |
T |
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