View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_33 (Length: 281)
Name: NF11006_low_33
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 25 - 259
Target Start/End: Complemental strand, 39536586 - 39536353
Alignment:
| Q |
25 |
cctgcaactggtatctctttttcagaatgattgccactatccatttccttaccacaatcttcgcagctaaaatattttccctttggcttagatcgaagag |
124 |
Q |
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| T |
39536586 |
cctgcaactggtatctctttttcagaatgattgccactatccattttcttaccacaatcttcgcagctaaaatattttccctttggcttagatcgaagag |
39536487 |
T |
|
| Q |
125 |
tgaaatcgtgcttcttaaaacaagtttccatagtatgaccacagtaaaattcaaacaaaattctaagaatcattaaccaaacttagtattgaaaaatcat |
224 |
Q |
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| T |
39536486 |
tgaaatcgtgcttcttaaaacaagtttccatagtatgaccacagtaaaattcaaacaaaattctaagaatcattaaccaaacttagta-tgaaaaatcat |
39536388 |
T |
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| Q |
225 |
gttcttaatgttgacagaagttgtttcaggactca |
259 |
Q |
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| T |
39536387 |
gttcttaatgttgacagaagttgtttcaggactca |
39536353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 2517808 - 2517941
Alignment:
| Q |
25 |
cctgcaactggtatctctttttcagaatgattgccactatccatttccttaccacaatcttcgcagctaaaatattttccctttggcttagatcgaagag |
124 |
Q |
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| T |
2517808 |
cctgcaactggtacctctttttcacaatgatttctgctatccattttctcatcacaatcgttgcggctaaagtattttccttttggctaagatccatgag |
2517907 |
T |
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| Q |
125 |
tgaaatcgtgcttcttaaaacaagtttccatagt |
158 |
Q |
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| T |
2517908 |
gcaaactgttcttctttaaacaagtttctatagt |
2517941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 2544323 - 2544359
Alignment:
| Q |
162 |
accacagtaaaattcaaacaaaattctaagaatcatt |
198 |
Q |
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| T |
2544323 |
accacagtaaaactcaaacaaaattctaagaatcatt |
2544359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 2361737 - 2361686
Alignment:
| Q |
100 |
tttccctttggcttagatcgaagagtgaaatcgtgcttcttaaaacaagttt |
151 |
Q |
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||||||||||||||||||||| ||| |||| | ||||||||||||| ||||| |
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| T |
2361737 |
tttccctttggcttagatcgaggagggaaaccatgcttcttaaaactagttt |
2361686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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