View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_34 (Length: 253)
Name: NF11006_low_34
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35428435 - 35428198
Alignment:
| Q |
1 |
tttcaggagtggttggaaagaactattattgatgtatatatgatctgaaaattttatagtcaatgtgttgaccctgttttatgaaatatgacgtgctaga |
100 |
Q |
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| T |
35428435 |
tttcaggagtggttggaaagaactattattgatgtat----gatctgaaaattttatagtcaatgtgttgaccctgttttatgaaatatgacgtgctaga |
35428340 |
T |
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| Q |
101 |
aataaaaaatgttttgaaagaattgatgttgacgtcgctatcattgttcaaagacacaaatgcatgttgttaattttaagagtgtctatgcggtgttgtt |
200 |
Q |
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| T |
35428339 |
aataaaaaatgttttgaaagaattgatgttgacgtcgttatcattgttcaaagacacaaatgcatgttgttaattttaagagtgcctatgcggtgttgtt |
35428240 |
T |
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| Q |
201 |
ggagatactaagtagaggtccaaatttacctatatctgatgt |
242 |
Q |
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| T |
35428239 |
ggagatactaagtagaggtccaaatttacctatatttgatgt |
35428198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 14069476 - 14069287
Alignment:
| Q |
54 |
ttatagtcaatgtgttgaccctgttttatgaaatatgacgtgctagaaataaaaaatgttttgaaagaattgatgttgacgtcgctatcattgttc-aaa |
152 |
Q |
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| T |
14069476 |
ttatagtccatgttttggccttgtgttatgagatatggtgtgctagaaataagaaatgttttgagttgactgatgttgatgtggctaccattgttcaaaa |
14069377 |
T |
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| Q |
153 |
gacacaaatgcatgttgttaattttaagagtgtctatgcggtgttgttggagatactaagtagaggtccaaatttacctatatctgatgt |
242 |
Q |
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| T |
14069376 |
ggcataaaaatctattgtgaattttaagagtgcaagtacggtgttgatggagacactaagtggaggtccaattttgccaatatctgatgt |
14069287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 14379504 - 14379315
Alignment:
| Q |
54 |
ttatagtcaatgtgttgaccctgttttatgaaatatgacgtgctagaaataaaaaatgttttgaaagaattgatgttgacgtcgctatcattgttc-aaa |
152 |
Q |
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| T |
14379504 |
ttatagtccatgttttggccttgtgttatgagatatggtgtgctagaaataagaaatgttttgagttgactgatgttgatgtggctaccattgttcaaaa |
14379405 |
T |
|
| Q |
153 |
gacacaaatgcatgttgttaattttaagagtgtctatgcggtgttgttggagatactaagtagaggtccaaatttacctatatctgatgt |
242 |
Q |
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| T |
14379404 |
ggcataaaaatctattgtgaattttaagagtgcaagtacggtgttgatggagacactaagtggaggtccaattttgccaatatctgatgt |
14379315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 11790968 - 11790893
Alignment:
| Q |
167 |
ttgttaattttaagagtgtcta-tgcggtgttgttggagatactaagtagaggtccaaatttacctatatctgatgt |
242 |
Q |
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| T |
11790968 |
ttgtgaattttaagagtg-ctagtacggtgttggtggagacactaagtggaggtccaattttgccaatatctgatgt |
11790893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 19625262 - 19625186
Alignment:
| Q |
166 |
gttgttaattttaagagtgtctatgcggtgttgttggagatactaagtagaggtccaaatttacctatatctgatgt |
242 |
Q |
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| T |
19625262 |
gttgtgaatttcaagagtgtcaatacaatgttgttggagacactaagtggaggtctaagtttgccaatatctgatgt |
19625186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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