View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_39 (Length: 226)
Name: NF11006_low_39
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 40341407 - 40341209
Alignment:
| Q |
18 |
actgaaggagtaataaacaaaatctgaatgaatgacaagagtataagaact-tagaagaagcaatataataaatattattattgagttgagatgagatat |
116 |
Q |
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| T |
40341407 |
actgaaggagtaataaacaaaatctgaatgaatgacaagagtataagaactctagaagaagcaatatagtaaatattattattgagttgagatgagatat |
40341308 |
T |
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| Q |
117 |
gtgaatgttgaagtgatggaacatataaaagacaaatgagaaaaatatggagcactgaaaaggaaaacacttgtacttcgggtactgagccctaagtaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40341307 |
gtgaatgttgaagtgatggaacatataaaagacaaatgagaaaaatatggagcactgaaaaggaaaacacttgtacttcgggaactgagccctaagtaa |
40341209 |
T |
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