View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_4 (Length: 714)
Name: NF11006_low_4
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 410 - 701
Target Start/End: Original strand, 41705459 - 41705750
Alignment:
| Q |
410 |
cttcaacctcggaccccactcccaacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgt |
509 |
Q |
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| T |
41705459 |
cttcaacctcggaccccactcccaacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgt |
41705558 |
T |
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| Q |
510 |
gaattaaaacccaagcttacctcggatccctctccccctaccaacatctcccacagcacccccatttcatgcaactcccatgcatgctctgtagcacaca |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41705559 |
gaattaaaacccaagcttacctcggatccctctccccctaccaacatctcccacagcacccccatttcatgcaactcccatgcatgctctgtagcacaca |
41705658 |
T |
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| Q |
610 |
gttccaccccctcttccgatctatgcacaatggctcattgccctttagactccattgaaaccaaagactgcggttcatttcactgtccacca |
701 |
Q |
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| T |
41705659 |
gttccaccccctcttccgatctatgcacaatggctcattgccctttagactccattgaaaccaaagactgcggttcatttcactgtccacca |
41705750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 350
Target Start/End: Original strand, 41705065 - 41705399
Alignment:
| Q |
13 |
aacctgtgcctcactcttctttttcccctttataaacaacaaacaaaacactctcattctctcactcacatcatcacacaccactccatctacaaattca |
112 |
Q |
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| T |
41705065 |
aacctgtgcctcactcttctttttcccctttataaacaacaaacaaaacactctcattctc--actcatatcatcacacaccactccatctacaaattca |
41705162 |
T |
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| Q |
113 |
aaaactcttctcctctctctgtattcaagttccaacacnnnnnnnncaaatac--tgtttaaccaaatggcttctcccctgttatttctcctcatcatca |
210 |
Q |
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| T |
41705163 |
aaaactcttctcctctct--gtattcaagttccaacacaaaaaaa-caaataccctgtttaaccaaatggcttctcccctgttatttctcctcctcatca |
41705259 |
T |
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| Q |
211 |
cactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccataatagaattcaacacaacccaccacctccttaaatc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
41705260 |
cactcttcatttcacattcttcatctcaaatgctactattacctctaacacactcactctccatgatagaattcaacacaacccaccacctccttaaatc |
41705359 |
T |
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| Q |
311 |
cacctcaactcactcattatcacgcttccaccgccataaa |
350 |
Q |
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| T |
41705360 |
cacctcaactcactcattatcacgcttccaccgccataaa |
41705399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 432 - 512
Target Start/End: Complemental strand, 3744418 - 3744338
Alignment:
| Q |
432 |
caacccataactctctacatggacacaggaagtgaccttgtttggttcccatgcacaccgttcaactgcatcctctgtgaa |
512 |
Q |
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|||| |||||| ||||||||||||||||| || ||||||||||||||||| || |||| ||| | ||||| ||||||||| |
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| T |
3744418 |
caactcataacactctacatggacacaggtagcgaccttgtttggttcccttgttcacctttcgaatgcattctctgtgaa |
3744338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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