View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_5 (Length: 597)
Name: NF11006_low_5
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 201 - 582
Target Start/End: Original strand, 34977686 - 34978077
Alignment:
| Q |
201 |
gttattctacatcaataattataagatatttattgtgttgtgccctcaagaggtttttggttggaatcctttcattctgaacagtctaatctccacaata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
34977686 |
gttattctacatcaataattataagatacttattgtgttgtgccctcaagaggtttttggttggaatcctttcattctgagcagtctaatctccacagta |
34977785 |
T |
|
| Q |
301 |
gtgataat-----------atgtaggtgattggcttcgacggtgatggaatttgatttctcgacgtggacttttgcaaaagtggcatccttatgttcttg |
389 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
34977786 |
gtgataatttgttgttaatatgtaggtgattggcttcgacggtgatggaatttgatttctcgaattggacttttgcaaaagtggcatccttatgttcttg |
34977885 |
T |
|
| Q |
390 |
atttggcatgtgtgttcccagtgaaagaagnnnnnnnntctgtagtcttttctttaataatggtatatggaacctcagttattgattcaagatactttgt |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977886 |
atttggcatgtgtgttcccagtgaaagaagaaaaaaaatctgtagtcttt-ctttaataatggtatatggaacctcagttattgattcaagatactttgt |
34977984 |
T |
|
| Q |
490 |
tattttttatttgagatttgagttatttgtgatgtattgtttgcaacatgttgtgagttttcctttcaaggattgcaagtccttaattctctg |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977985 |
tattttttatttgagatttgagttatttgtgatgtattgtttgcaacatgttgtgagttttcctttcaaggattgcaagtccttaattctctg |
34978077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 202 - 513
Target Start/End: Original strand, 34991635 - 34991948
Alignment:
| Q |
202 |
ttattctacatcaataattataagatatttattgtgttgtgccctcaagaggtttttggttggaatcctttcattctgaacagtctaatctccacaatag |
301 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||||||||||| |||||| |||||||||||||||||| ||| |||| |||||||||||||||||||| |
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| T |
34991635 |
ttattctacattaataattataaggtttttattgtgttgtgcc-tcaagatttttttggttggaatccttacatcctgagcagtctaatctccacaatag |
34991733 |
T |
|
| Q |
302 |
tgataatatgtaggtgat-----------tggcttcgacggtgatggaatttgatttctcgacgtggacttttgcaaaagtggcatccttatgttcttga |
390 |
Q |
| |
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| ||||| ||| | | || |||| |||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34991734 |
taataatttgttgttaatctgtagaattttggcgtcgatgatgatggaatttgttttctcgaagtggacttttgcaaaagtggcatccttatgttcttga |
34991833 |
T |
|
| Q |
391 |
tttggcatgtgtgttcccagt-gaaagaagnnnnnnnntctgtagtcttttctttaataatggtatatggaacctcagttattgattcaagatactttgt |
489 |
Q |
| |
|
|||||||||||||||||| || |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34991834 |
tttggcatgtgtgttccctgtggaaacaaaaa--------tgtagtc-tttctttaataatggtatatggaacctcagttattgattcaagatactttgt |
34991924 |
T |
|
| Q |
490 |
tattttttatttgagatttgagtt |
513 |
Q |
| |
|
| |||||||||| ||||||||||| |
|
|
| T |
34991925 |
tgttttttatttcagatttgagtt |
34991948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 34977486 - 34977609
Alignment:
| Q |
1 |
ggttttctaaagggatagatatcacacgccatccaagggtcagaaaaggtgaacattttcttccatatctaattgtaaaaatgcattggcaatatttctg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977486 |
ggtttcctaaagggatagatatcacacgccatccaagggtcagaaaaggtgaacattttcttccatatctaattgtaaaaatgcattggcaatatttctg |
34977585 |
T |
|
| Q |
101 |
gttctgttatcaaagtaaaacttc |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
34977586 |
gttctgttatcaaagtaaaacttc |
34977609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 203 - 398
Target Start/End: Original strand, 34984944 - 34985150
Alignment:
| Q |
203 |
tattctacatcaataattataagatatttattgtgttgtgccctcaagaggtttttggttggaatcctttcattctgaacagtctaatctccacaatag- |
301 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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|
| T |
34984944 |
tattctacatcaataattataaggtttttattgtgttgtgccctcaagaggtttttggttggaatccttacattctgagcagtctaatctccacaatagt |
34985043 |
T |
|
| Q |
302 |
----------tgataatatgtaggtgattggcttcgacggtgatggaatttgatttctcgacgtggacttttgcaaaagtggcatccttatgttcttgat |
391 |
Q |
| |
|
|| |||| ||||||| ||| ||| ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||||||||||| |
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| T |
34985044 |
aataatttgttgttaatctgtaggtttctggtttcatgggtgatggaatttgattactccaagtggacttttgaaaaagtggcatctttatgttcttgat |
34985143 |
T |
|
| Q |
392 |
ttggcat |
398 |
Q |
| |
|
||||||| |
|
|
| T |
34985144 |
ttggcat |
34985150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 201 - 418
Target Start/End: Complemental strand, 2303671 - 2303440
Alignment:
| Q |
201 |
gttattctacatcaataattataagatatttattgtgt---tgtgccctcaagaggtttttggttggaatcctttcattctgaacagtctaatctccaca |
297 |
Q |
| |
|
||||||||| ||||||||||||||| | |||| ||||| |||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
2303671 |
gttattctagatcaataattataaggtttttactgtgtgtttgtgtccaaaagaggtttttggttggaatcatttcattctgagcagtctaatctccacc |
2303572 |
T |
|
| Q |
298 |
atagtgataatatgt-----------aggtgattggcttcgacggtgatggaatttgatttctcgacgtggacttttgcaaaagtggcatccttatgttc |
386 |
Q |
| |
|
||||| ||||| ||| |||| ||||| |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2303571 |
atagtaataatttgttgttaatctgtaggtcgttggcgtcgaatgtgatggaattagatttctcgaagtggacttttgcaaaagtggcatccttatgttc |
2303472 |
T |
|
| Q |
387 |
ttgatttggcatgtgtgttcccagtgaaagaa |
418 |
Q |
| |
|
|| ||| |||||||||||| |||||||||||| |
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|
| T |
2303471 |
ttcattaggcatgtgtgttgccagtgaaagaa |
2303440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 42 - 123
Target Start/End: Original strand, 34984787 - 34984866
Alignment:
| Q |
42 |
agaaaaggtgaacattttcttccatatctaattgtaaaaatgcattggcaatatttctggttctgttatcaaagtaaaactt |
123 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34984787 |
agaaaaggtgaacattttcttccatat--aattgtaaaaatgtattggcaatatttctggttctgtcatcaaagtaaaactt |
34984866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 454 - 582
Target Start/End: Original strand, 34985149 - 34985281
Alignment:
| Q |
454 |
atatggaacctcagttattgattcaagatactttgttattttttatttgagatttgagttatttgtgatgtattgttt-----gcaacatgttgtgag-- |
546 |
Q |
| |
|
||||| ||| ||||||||||||||| |||||||||| ||||| |||||||| |||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
34985149 |
atatgaaacatcagttattgattcaggatactttgtaattttctatttgag---tgagttatttgtgatgtattgtattgtatgcaacatgttgtgagag |
34985245 |
T |
|
| Q |
547 |
ttttcctttcaaggattgcaagtccttaattctctg |
582 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
34985246 |
ttttcctttcaaggattataagaccttaattctctg |
34985281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 527
Target Start/End: Complemental strand, 2303397 - 2303349
Alignment:
| Q |
478 |
aagatactttgttattttttatttgagatttgagttatttgtgatgtatt |
527 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| || ||||| ||||||| |
|
|
| T |
2303397 |
aagatactttgttattttttatttg-gatttgaattgtttgtcatgtatt |
2303349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 34991522 - 34991554
Alignment:
| Q |
87 |
tggcaatatttctggttctgttatcaaagtaaa |
119 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
|
|
| T |
34991522 |
tggcaatatttctggttctgtcatcaaagtaaa |
34991554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 546 - 582
Target Start/End: Original strand, 34991949 - 34991985
Alignment:
| Q |
546 |
gttttcctttcaaggattgcaagtccttaattctctg |
582 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
34991949 |
gttttcctttcaaggattgtaagaccttaattctctg |
34991985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 201 - 308
Target Start/End: Original strand, 40582270 - 40582377
Alignment:
| Q |
201 |
gttattctacatcaataattataagatatttattgtgttgtgccctcaagaggtttttggttggaatcctttcattctgaacagtctaatctccacaata |
300 |
Q |
| |
|
|||||||||| |||||||||||||| | | ||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| |
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|
| T |
40582270 |
gttattctacgtcaataattataaggtttctattgtgttgtaccctcaagaggtttttggttggaatcatttcattctaagcagtctaatctccacaata |
40582369 |
T |
|
| Q |
301 |
gtgataat |
308 |
Q |
| |
|
|| ||||| |
|
|
| T |
40582370 |
gtaataat |
40582377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 121
Target Start/End: Original strand, 40582138 - 40582189
Alignment:
| Q |
70 |
taattgtaaaaatgcattggcaatatttctggttctgttatcaaagtaaaac |
121 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
40582138 |
taattgtaaaaatatattggcaatatttctggttctgtcatcaaagcaaaac |
40582189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 522
Target Start/End: Complemental strand, 22646054 - 22645999
Alignment:
| Q |
466 |
agttattgattcaagatacttt-gttattttttatttgagatttgagttatttgtgat |
522 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| |||||||||||||||| |||||||| |
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|
| T |
22646054 |
agttattgattcaagatagtttcgttatttt--atttgagatttgagttgtttgtgat |
22645999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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