View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_6 (Length: 581)
Name: NF11006_low_6
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Complemental strand, 45515034 - 45514490
Alignment:
| Q |
19 |
cagagagggctacagcattgtcccgacaataaaattctgttaaagctttattttcatcgttgttattataagccaaaatggccaataatttgttgacatt |
118 |
Q |
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| T |
45515034 |
cagagagggctacaacattgtcccggcaataaaattctgttaaagctttattttcatcgttgttattataagccaaaatggccaataatttgttgacatt |
45514935 |
T |
|
| Q |
119 |
atttgtctaattgaatgttacatttcaaataagaaaatataaccattcatacatgtatcactatggtttacatatgtagagtgttggttatgttacattt |
218 |
Q |
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| T |
45514934 |
atttgtctaattgaatgttacatttcaaataagaaaatataaccattcatacatgtatcactatggtttacatatgtagagtgttggttatgttacattt |
45514835 |
T |
|
| Q |
219 |
ttccgaagttactgttacaaaacaacatgagnnnnnnntaggcagaaaaaatacatcttttactagagtactagagaaatacaaatgccaaaggattgtc |
318 |
Q |
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| T |
45514834 |
ttccgaagttactgttacaaaacaacatgagaaaaaaataggcagaaaaaatacatcttttactagagtactagagaaatacaaatgccaaaggattgtc |
45514735 |
T |
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| Q |
319 |
ttaacttcataaacgaatgcaatttgatgtgtttggtgaatatatcaactgcatattcttcactcctgcataaaaacaagtaaactacttcatccttaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45514734 |
ttaacttcataaacgaatgcaatttgatgtgtttggtgaatatatcaactgcatattcttcactcctgcataaaaacaagtaaactacttcatccttaat |
45514635 |
T |
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| Q |
419 |
gagaataatctcttaagaaatgattcttttgatctatatgctacttttcccatgttgaacttgattttttgagagctgtattgtttgcagtgtccagttg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45514634 |
gagaataatctcttaagaaatgattcttttgatctatatgctacttttcccatgttgaacttgattttttgagagctgtattgtttgcagtgtccagttg |
45514535 |
T |
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| Q |
519 |
cttgaaaatttaaaaaattcccctttttgtagaagagcccgtaac |
563 |
Q |
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| T |
45514534 |
cttgaaaatttaaaaaattcccctttttgtagaagagcccgtaac |
45514490 |
T |
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