View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11006_low_7 (Length: 578)
Name: NF11006_low_7
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 20 - 576
Target Start/End: Original strand, 32377738 - 32378293
Alignment:
| Q |
20 |
atatgtagtaacaaatagatagcaaagccaccaaaaaggtgaaatcactatagtacttttttatcaagtggctctcaactaacatacgataaggtaaatc |
119 |
Q |
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| T |
32377738 |
atatgtagtaacaaatagatagcaaagccaccacaaaggtgagatcactatagtacttttttatcaagtggctctcaactaacatacgataaggtaaatc |
32377837 |
T |
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| Q |
120 |
atatgtgnnnnnnnnnntgttatttgaacattattttgggatagtaaagttcgataatgttttaaatggttaatgcatttcacacactaggttcactcaa |
219 |
Q |
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| T |
32377838 |
atatgtgaaaaaaaaa-tgttatttgaacattattttgggttagtaaagttcgataatgttttaaatggttaatgcatttcacacactaggttcactcaa |
32377936 |
T |
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| Q |
220 |
ttttacactaataaaggcctttatggaagctgttttggaggagttgaagacatggtgttgtgcaaaatacccaacaattaaaagcttcagactttaaaac |
319 |
Q |
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| T |
32377937 |
ttttacactaataaaggcctttatggaagctgttttggaggagttgaagatatggtgttgtgcaaaatacccaacaattaaaagcttcagactttaaaac |
32378036 |
T |
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| Q |
320 |
tatgacatgttatcattgtcacaggaacgtgtaaaatatcatatgcttgttaaaaagcaaggacttcattcaacaagtgattttactctacaaagcatca |
419 |
Q |
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| T |
32378037 |
tatgacatgttatcattgtcacaggaacgtataaaatatcatatgcttgttaaaaagcaaggacttcattcaacaagtgattttactctacaaagcatca |
32378136 |
T |
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| Q |
420 |
aaaagatggttactactatcaaagtaaatggtgaaagtgcggatttccattggagcaagctccacagttcgctcttttggatcaactgaacctccccttg |
519 |
Q |
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| T |
32378137 |
aaaagatggttactactatcaaagtaaatggtgaaagtgcggatttccattggagcaagctccacagttcgctcttttggatcaactgaacctccccttg |
32378236 |
T |
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| Q |
520 |
aaacaccttcatttccagaagatccttctactttccaaacaagtctctgcttctcca |
576 |
Q |
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| T |
32378237 |
aaacaccttcatttccagaagatccttctactttccaaacaagtctcttcttctcca |
32378293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 558
Target Start/End: Complemental strand, 19413457 - 19413359
Alignment:
| Q |
460 |
ggatttccattggagcaagctccacagttcgctcttttggatcaactgaacctccccttgaaacaccttcatttccagaagatccttctactttccaaa |
558 |
Q |
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| T |
19413457 |
ggatttccattggacgaagctcatcagttagctcttttagatgaactggacctccccatagaacaactccatttctagaagagcattctactttccaaa |
19413359 |
T |
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