View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11006_low_8 (Length: 543)
Name: NF11006_low_8
Description: NF11006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11006_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 12 - 526
Target Start/End: Original strand, 54657239 - 54657751
Alignment:
| Q |
12 |
aagaactgattttgaataaaagtgaattgaactaaagtaaatttatgtttagatacattcacataaaattggtttttatcgcaggagcaagatcaagacc |
111 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
54657239 |
aagaactgattttgaataaaagtgaatagaactaaagtaaatttatgtttagatacattcacataaaattggtttttatcacaggagcaagatcaagacc |
54657338 |
T |
|
| Q |
112 |
gatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657339 |
gatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgc |
54657438 |
T |
|
| Q |
212 |
ttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccggccac |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54657439 |
ttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacaggccggccac |
54657538 |
T |
|
| Q |
312 |
atcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54657539 |
atcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaat |
54657638 |
T |
|
| Q |
412 |
ccgactacttgcacttatcttcatctgtcttagacgcggaatcccttggtcttctccactttctc-aaatggcgatatccaacgatttgcataatgttat |
510 |
Q |
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| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
54657639 |
ctaactacttgcacttatct---tctgtcttagacgcggaatcccttggtcttctccactttctcaaaatggcgatatccaacgatttgcataatgttat |
54657735 |
T |
|
| Q |
511 |
gtttgaaacggatagc |
526 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
54657736 |
gtttgaaacggatagc |
54657751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 108 - 526
Target Start/End: Original strand, 43733389 - 43733808
Alignment:
| Q |
108 |
gaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctctt |
207 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| | | | | ||||||| |
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|
| T |
43733389 |
gaccgacctctggctgccatgattctttggagtttgtggaagagtcgttataccaagctttgggaggctacaaacacttcacccatctttaatgtctctc |
43733488 |
T |
|
| Q |
208 |
gtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcccgg |
307 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |
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|
| T |
43733489 |
atgcttatgatgtgctccacgaatggagctgcatgtaacgagctaagtatcatgcaagcccccaagatcatcaattgacgtggaccaagccgcagcccga |
43733588 |
T |
|
| Q |
308 |
ccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaatt |
407 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| ||||||||| ||||| ||||| | ||||||||||||||||||||| ||||||||||||||| | |
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|
| T |
43733589 |
ccatatcaaatgcaatgttgacacggtcaatttcaataataactttattactgcttacgatttatgctttagagactcaacgtgatctctattattaggt |
43733688 |
T |
|
| Q |
408 |
aaatccgactacttgcacttatcttcatctgtcttagacgcggaatcccttggtcttctccactttctc-aaatggcgatatccaacgatttgcataatg |
506 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||| |||| ||||||| || |||||| ||||| ||||| |
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|
| T |
43733689 |
aaatccgactacttgaacttatcttcatctgtcttagaagcagaatcccttggtcttctccactctctcaaaatggcaatgtccaacagtttgcgtaatg |
43733788 |
T |
|
| Q |
507 |
ttatgtttgaaacggatagc |
526 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
43733789 |
taatgtttgaaacggatagc |
43733808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 105 - 526
Target Start/End: Complemental strand, 28570860 - 28570441
Alignment:
| Q |
105 |
caagaccgatctcttgctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtct |
204 |
Q |
| |
|
||||||||| |||| ||| |||| |||||||||||| | | ||||||| |||||||||||||||||||||||| |||||||| || ||| ||||||||| |
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|
| T |
28570860 |
caagaccgacctctggctaccatgattctttggagtctctagaagagtcgtaataccaagctttgggaggctagaaacacttgacccaccttcattgtct |
28570761 |
T |
|
| Q |
205 |
cttgtgcttatgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaacggacgtggaccaagccacagcc |
304 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||||||||| || |||||||||||| || || |
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|
| T |
28570760 |
cttatgctcatgatgtgctacacgaatggagctgcatgcaacgagctaag---cgggcaag-ccctaagatcagcaatcgatgtggaccaagccgcaacc |
28570665 |
T |
|
| Q |
305 |
cggccacatcaaatgcaatgttgacacgaccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattatta |
404 |
Q |
| |
|
|| |||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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|
| T |
28570664 |
cgaccacatcaaatgcaatgttgacgcatccaatttcaataataactctattatggcttacagtttatgctttagagactcaacatgatctctatt-tta |
28570566 |
T |
|
| Q |
405 |
attaaatccgactacttgcacttatcttcatctgtcttagacgcggaatcccttggtcttctccactttct-caaatggcgatatccaacgatttgc--- |
500 |
Q |
| |
|
|||| | |||||||||||||||||||||||||| || || | | ||||||||||||||||||||| ||| ||||||| |||||||||||||||| |
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|
| T |
28570565 |
ggtaaa-ctgactacttgcacttatcttcatctgttttggaagtgaaatcccttggtcttctccactctctgaaaatggcaatatccaacgatttgcgta |
28570467 |
T |
|
| Q |
501 |
ataatgttatgtttgaaacggatagc |
526 |
Q |
| |
|
|| ||||||||||||||||||||||| |
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|
| T |
28570466 |
atgatgttatgtttgaaacggatagc |
28570441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 334 - 445
Target Start/End: Complemental strand, 29928810 - 29928699
Alignment:
| Q |
334 |
ccaatttccataataactctattatggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttc |
433 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
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|
| T |
29928810 |
ccaatttcaataataactttattatggcttacaatttatgctttagagactcaacatgatctctgttatttgataaatgtgactacttgcacttatcttt |
29928711 |
T |
|
| Q |
434 |
atctgtcttaga |
445 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
29928710 |
atctatcttaga |
29928699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 282
Target Start/End: Complemental strand, 29928997 - 29928835
Alignment:
| Q |
120 |
gctgccataattctttggagtttgtggaagagtagtaataccaagctttgggaggctacaaacacttcactgaccctcattgtctcttgtgcttatgatg |
219 |
Q |
| |
|
|||||||| |||||||| ||||| |||||| || |||| || ||||||||| | |||| ||||||||| ||| ||||||||||| |||| |||||| |
|
|
| T |
29928997 |
gctgccatgattctttgaagtttatggaagtgtcgtaacacgaagctttggaaagctagtgacacttcacccaccttcattgtctctcatgctcatgatg |
29928898 |
T |
|
| Q |
220 |
tgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaagatcagcaac |
282 |
Q |
| |
|
|| |||| ||||||| |||||||||| |||||| |||| | |||||||||||||||| |||| |
|
|
| T |
29928897 |
tgttacatgaatggatttgcatgcaacaagctaaacatctgacaagcccccaagatcaacaac |
29928835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 273
Target Start/End: Complemental strand, 42703227 - 42703168
Alignment:
| Q |
214 |
atgatgtgctacacgaatggagctgcatgcaacgagctaagcatccggcaagcccccaag |
273 |
Q |
| |
|
||||||||||| |||||||||| | ||||||| ||||||| |||||||| ||||||||| |
|
|
| T |
42703227 |
atgatgtgctatacgaatggagtttcatgcaaagagctaaacatccggcgtgcccccaag |
42703168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 471
Target Start/End: Complemental strand, 42703084 - 42702970
Alignment:
| Q |
357 |
atggcttatggtttatgctttagagactcaacatgatctctattattaattaaatccgactacttgcacttatcttcatctgtcttagacgcggaatccc |
456 |
Q |
| |
|
||||||||||| || || |||||||||||| || || | |||||| | |||||| || ||||||||||||||| |||| || | || || ||||| | |
|
|
| T |
42703084 |
atggcttatggattgtgttttagagactcatcaggagcactattaatgggtaaatctgaatacttgcacttatctgtatctatcctggaagctgaatctc |
42702985 |
T |
|
| Q |
457 |
ttggtcttctccact |
471 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
42702984 |
ttggtcttctccact |
42702970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 34763053 - 34763013
Alignment:
| Q |
345 |
aataactctattatggcttatggtttatgctttagagactc |
385 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
34763053 |
aataactctatcatgggctatggtttatgctttagagactc |
34763013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 34763794 - 34763834
Alignment:
| Q |
345 |
aataactctattatggcttatggtttatgctttagagactc |
385 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
34763794 |
aataactctatcatgggctatggtttatgctttagagactc |
34763834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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