View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11007_high_10 (Length: 351)

Name: NF11007_high_10
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11007_high_10
NF11007_high_10
[»] chr2 (1 HSPs)
chr2 (47-336)||(1358860-1359149)


Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 47 - 336
Target Start/End: Complemental strand, 1359149 - 1358860
Alignment:
Q  47 tctcatagcatatagactctagtatcttggtttgtaactatcacttgtaaattttaccatcgacgcactcaatcaatcaaacgacttattttatgtttat 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  1359149 tctcatagcatatagactctagtatcttggtttgtaactatcacttgtaaattttaccatcgacacactcaatcaatcaaacaacttattttatgtttat 1359050  T
Q  147 atgcctctaacattttacttatatttttcttcgcatttttgttcttaaaattatttaccccatttaatactctttgaagtagttaaagaactcgtagcat 246  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1359049 atgcctctaacattttacttatatttttcttcgcattttagttcttaaaattatttaccccatttaatactctttgaagtagttaaaggactcgtagcat 1358950  T
Q  247 tgacccagttcttctctctcgacctaatcgtttgaagaactaatactctttgaagtagttaaaatctcatagcatagagacgaagttcat 336  Q
    |||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1358949 tgacgcagttcttttctattgacctaatcgtttgaagaactaatactctttgaagtagttaaaatctcatagcatagagacgaaattcat 1358860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University