View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11007_high_15 (Length: 243)
Name: NF11007_high_15
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28595634 - 28595409
Alignment:
| Q |
1 |
tatattaattaaattttaaattaacttaa-cttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacata |
99 |
Q |
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| T |
28595634 |
tatattaattaaattttaaattaacttaaacttacagcaaatgatgcatcacgtgccgctattgctacaatgtcagcacaagacacaactccaggacata |
28595535 |
T |
|
| Q |
100 |
ctttctctacatcagcttttgctttatcaataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595534 |
ctttctctacatcagcttttgctttatcaataacttggaaacctcttacagaattaagatttggaagtgcactcttttcactctcaattgtggaggtgtc |
28595435 |
T |
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| Q |
200 |
gtctagcaaaattgatgcatcacaac |
225 |
Q |
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|||||||||||||||||||||||||| |
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| T |
28595434 |
gtctagcaaaattgatgcatcacaac |
28595409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 32493839 - 32493621
Alignment:
| Q |
8 |
attaaattttaaattaacttaa-cttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatactttctc |
106 |
Q |
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||||||||| |||||||||||| |||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
32493839 |
attaaatttcaaattaacttaaacttacagcaaatgatgcatcacgagctgctactgctacgatgtcagcacaagacacaactccagggcatactttctc |
32493740 |
T |
|
| Q |
107 |
tacatcagcttttgctttatcaataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagc |
206 |
Q |
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| T |
32493739 |
cacattagcttttgctttatcaataacttcaaatcctcttacagagttaatatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagc |
32493640 |
T |
|
| Q |
207 |
aaaattgatgcatcacaac |
225 |
Q |
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||||||||||||||||||| |
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| T |
32493639 |
aaaattgatgcatcacaac |
32493621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 225
Target Start/End: Original strand, 28587211 - 28587397
Alignment:
| Q |
39 |
aatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatcaataacttgga |
138 |
Q |
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|||||||||||||||||||| | || | ||||| || |||||||||||||| ||||| |||||||| || |||| ||||||||||||||| | || | |
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| T |
28587211 |
aatgatgcatcacgtgctgccacagcaagtatgtccgcgcaagacacaactccgggacaaactttctcaacctcagattttgctttatcaatgatttcaa |
28587310 |
T |
|
| Q |
139 |
aacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcacaac |
225 |
Q |
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| T |
28587311 |
atcctcttactgagttaacatttggacgtgcactcttttcgctctcgattgtggaactatcatccaacaaaattgatgcatcacaac |
28587397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 28592386 - 28592581
Alignment:
| Q |
28 |
aacttacaacaaatgatgcatcacgtgctgctattgctacaatgtcagcacaagacacaactccaggacatactttctctacatcagcttttgctttatc |
127 |
Q |
| |
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|||||||| |||||||||||||||||||||| | |||| ||||| || |||||||||||||| ||||| | |||||| || |||| |||||||||||| |
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| T |
28592386 |
aacttacagcaaatgatgcatcacgtgctgccacagctagtatgtccgcgcaagacacaactccgggacaaattttctcaacctcagattttgctttatc |
28592485 |
T |
|
| Q |
128 |
aataacttggaaacctcttacagagttaagatttggaagtgcactcttttcactctcaattgtggaggtgtcgtctagcaaaattgatgcatcaca |
223 |
Q |
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||| | || || |||||||| ||||||| ||| ||||||||| ||||||| ||||| ||||| | |||| || | |||||||||||||||||| |
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| T |
28592486 |
aatgatttcaaatcctcttactgagttaatattaggaagtgcattcttttcgctctcgattgtaggactgtcatccaacaaaattgatgcatcaca |
28592581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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