View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11007_high_18 (Length: 236)

Name: NF11007_high_18
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11007_high_18
NF11007_high_18
[»] chr1 (13 HSPs)
chr1 (1-223)||(50751159-50751381)
chr1 (101-149)||(6932116-6932164)
chr1 (88-139)||(5268311-5268362)
chr1 (82-137)||(28024546-28024601)
chr1 (86-147)||(5410697-5410758)
chr1 (89-126)||(7335907-7335944)
chr1 (87-126)||(4347033-4347072)
chr1 (92-126)||(40352455-40352489)
chr1 (115-149)||(47725165-47725199)
chr1 (115-149)||(47732157-47732191)
chr1 (96-149)||(47978366-47978419)
chr1 (92-140)||(27801666-27801714)
chr1 (88-120)||(37724370-37724402)
[»] chr7 (16 HSPs)
chr7 (86-149)||(45557455-45557518)
chr7 (86-145)||(29829305-29829364)
chr7 (92-139)||(117861-117908)
chr7 (88-126)||(38510377-38510415)
chr7 (86-139)||(40491668-40491721)
chr7 (92-137)||(44856735-44856780)
chr7 (73-126)||(48459752-48459805)
chr7 (87-139)||(4228603-4228655)
chr7 (93-125)||(7276053-7276085)
chr7 (86-126)||(15311230-15311270)
chr7 (88-120)||(23783202-23783234)
chr7 (87-123)||(26975314-26975350)
chr7 (92-140)||(32187001-32187049)
chr7 (87-147)||(36920171-36920231)
chr7 (92-140)||(41715718-41715766)
chr7 (86-126)||(44967413-44967453)
[»] chr4 (8 HSPs)
chr4 (92-149)||(33843807-33843864)
chr4 (87-139)||(21743088-21743139)
chr4 (92-139)||(36150629-36150676)
chr4 (93-126)||(55638782-55638815)
chr4 (88-149)||(55647993-55648054)
chr4 (92-124)||(17898085-17898117)
chr4 (86-146)||(20712749-20712809)
chr4 (92-140)||(48550242-48550290)
[»] chr8 (6 HSPs)
chr8 (86-140)||(16972005-16972059)
chr8 (87-126)||(19649229-19649268)
chr8 (86-125)||(38875211-38875250)
chr8 (23-53)||(11038125-11038155)
chr8 (23-53)||(13929819-13929849)
chr8 (92-140)||(36779439-36779487)
[»] chr6 (7 HSPs)
chr6 (92-149)||(34911039-34911095)
chr6 (80-149)||(28466916-28466985)
chr6 (80-149)||(34736748-34736817)
chr6 (25-53)||(19260995-19261023)
chr6 (83-147)||(29409257-29409321)
chr6 (73-149)||(34620963-34621039)
chr6 (73-149)||(34748400-34748476)
[»] chr3 (12 HSPs)
chr3 (86-143)||(3776612-3776669)
chr3 (86-139)||(37334976-37335029)
chr3 (87-126)||(7012675-7012714)
chr3 (86-149)||(31084241-31084304)
chr3 (93-124)||(35132231-35132262)
chr3 (87-126)||(44225600-44225639)
chr3 (92-126)||(10852740-10852774)
chr3 (92-126)||(23918882-23918916)
chr3 (93-139)||(24916581-24916627)
chr3 (92-126)||(42644302-42644336)
chr3 (92-149)||(29252129-29252186)
chr3 (93-145)||(35951128-35951180)
[»] chr2 (12 HSPs)
chr2 (86-127)||(4119381-4119422)
chr2 (92-149)||(10918652-10918709)
chr2 (86-138)||(15220804-15220856)
chr2 (86-149)||(3853943-3854006)
chr2 (87-126)||(23359955-23359994)
chr2 (92-123)||(44439350-44439381)
chr2 (92-149)||(30503303-30503360)
chr2 (81-118)||(42973014-42973051)
chr2 (86-126)||(4908880-4908920)
chr2 (93-149)||(22882875-22882931)
chr2 (86-130)||(33502324-33502368)
chr2 (86-126)||(38600468-38600508)
[»] chr5 (10 HSPs)
chr5 (87-139)||(27374236-27374288)
chr5 (87-126)||(22811075-22811114)
chr5 (100-143)||(39514933-39514976)
chr5 (23-53)||(12208955-12208985)
chr5 (115-149)||(34454048-34454082)
chr5 (88-125)||(24036623-24036660)
chr5 (89-126)||(43438619-43438656)
chr5 (91-123)||(7667751-7667783)
chr5 (23-51)||(13224732-13224760)
chr5 (86-126)||(14299416-14299456)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 50751381 - 50751159
Alignment:
Q  1 ctttttattttcttataattgcataattgattttgacatgtttggatgttctctacaattgatttttagtcgacttttatgtaactgtattcaaacataa 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50751381 ctttttgttttcttataattgcataattgattttgacatgtttggatgttctctacaattgatttttagtcgacttttatgtaactgtattcaaacataa 50751282  T
Q  101 atcactttacatttaactcacttttagtccgaatcaattcattcaaaataaccaaacacgcttaaatcatgctgcattttcaggtttgatgcactgaaat 200  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50751281 atcattttacatttaactcacttttagtccgaatcaattcattcaaaataaccaaacacgcttaaatcatgctgtattttcaggtttgatgcactgaaat 50751182  T
Q  201 atcttggtaaaatgagaggaaag 223  Q
    |||||||||||||||||||||||    
T  50751181 atcttggtaaaatgagaggaaag 50751159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 6932164 - 6932116
Alignment:
Q  101 atcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  6932164 atcattttacattcaactcacttttagtcagaatcaattcattcaaaat 6932116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 5268311 - 5268362
Alignment:
Q  88 tattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 139  Q
    |||||||||| ||||||||||||||| ||||||||||||| | |||||||||    
T  5268311 tattcaaacaaaaatcactttacattcaactcacttttaggcagaatcaatt 5268362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 28024546 - 28024601
Alignment:
Q  82 taactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaa 137  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||  |||||||    
T  28024546 taactgtatgtaaacaaaaatcactttacatttaactcacttttagtttgaatcaa 28024601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 5410697 - 5410758
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaa 147  Q
    ||||||||||||||||||| |||||||  |||||||||||| ||  ||||||||| ||||||    
T  5410697 tgtattcaaacataaatcaatttacatccaactcacttttaatcaaaatcaattctttcaaa 5410758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 7335944 - 7335907
Alignment:
Q  89 attcaaacataaatcactttacatttaactcactttta 126  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  7335944 attcaaacataaatcactttacattcaactcactttta 7335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 4347033 - 4347072
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcactttta 126  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  4347033 gtatccaaacataaatcactttacattcaactcactttta 4347072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 40352455 - 40352489
Alignment:
Q  92 caaacataaatcactttacatttaactcactttta 126  Q
    |||||||||||||||||||||| ||||||||||||    
T  40352455 caaacataaatcactttacattaaactcactttta 40352489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 47725199 - 47725165
Alignment:
Q  115 aactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||||||||||||| |||||||||||||||||||    
T  47725199 aactcacttttagtcagaatcaattcattcaaaat 47725165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 47732191 - 47732157
Alignment:
Q  115 aactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||||||||||||| |||||||||||||||||||    
T  47732191 aactcacttttagtcagaatcaattcattcaaaat 47732157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 47978419 - 47978366
Alignment:
Q  96 cataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    |||||||||||||||||| ||||||||||||  |  |||||||||| |||||||    
T  47978419 cataaatcactttacattcaactcacttttacccaaaatcaattcactcaaaat 47978366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 27801714 - 27801666
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 140  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  27801714 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 27801666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 37724402 - 37724370
Alignment:
Q  88 tattcaaacataaatcactttacatttaactca 120  Q
    |||||||||||||||||||||||||| ||||||    
T  37724402 tattcaaacataaatcactttacattaaactca 37724370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 45557455 - 45557518
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||| |||||| |||||||||||| || ||||||||||||||| |||||||||||||||||||    
T  45557455 tgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaattcattcaaaat 45557518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 29829364 - 29829305
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattca 145  Q
    ||||| |||||||||||||||||||||| |||||| |||||| | |||||||||||||||    
T  29829364 tgtatccaaacataaatcactttacattcaactcatttttagccagaatcaattcattca 29829305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 117861 - 117908
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaatt 139  Q
    |||||| ||| ||||||||||||||||||||||||||| |||| ||||    
T  117861 caaacaaaaaccactttacatttaactcacttttagtcggaataaatt 117908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Complemental strand, 38510415 - 38510377
Alignment:
Q  88 tattcaaacataaatcactttacatttaactcactttta 126  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  38510415 tattcaaacataaatcactttatattcaactcactttta 38510377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 40491668 - 40491721
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 139  Q
    ||||| |||| |||||||||||||| || |||||||||||||||  ||||||||    
T  40491668 tgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaatt 40491721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 44856780 - 44856735
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaa 137  Q
    |||||||||||| ||||||||| ||||||||||||| | |||||||    
T  44856780 caaacataaatcgctttacattcaactcacttttaggcagaatcaa 44856735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 48459752 - 48459805
Alignment:
Q  73 acttttatgtaactgtattcaaacataaatcactttacatttaactcactttta 126  Q
    ||||||| |||| ||||| ||||||||||||| || ||||| ||||||||||||    
T  48459752 acttttaagtaagtgtatccaaacataaatcaattcacattcaactcactttta 48459805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 4228603 - 4228655
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 139  Q
    |||| ||||||||||||||||| |||| |||||||||||| ||  ||||||||    
T  4228603 gtatccaaacataaatcacttttcattcaactcacttttaatcaaaatcaatt 4228655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 7276053 - 7276085
Alignment:
Q  93 aaacataaatcactttacatttaactcactttt 125  Q
    |||||||||||||||||||||||| ||||||||    
T  7276053 aaacataaatcactttacatttaaatcactttt 7276085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 15311270 - 15311230
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcactttta 126  Q
    ||||| ||||||||||||||| |||||| ||||||||||||    
T  15311270 tgtatccaaacataaatcactatacattcaactcactttta 15311230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 23783202 - 23783234
Alignment:
Q  88 tattcaaacataaatcactttacatttaactca 120  Q
    |||||||||||||||| ||||||||||||||||    
T  23783202 tattcaaacataaatcgctttacatttaactca 23783234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 26975350 - 26975314
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcactt 123  Q
    |||||||||||||||||| |||||||| |||||||||    
T  26975350 gtattcaaacataaatcattttacattcaactcactt 26975314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 32187001 - 32187049
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 140  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  32187001 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 32187049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 36920231 - 36920171
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaa 147  Q
    |||||||||||||||||| |||| || |||||||||||||  |  ||||||||| ||||||    
T  36920231 gtattcaaacataaatcaatttatatctaactcacttttaaccaaaatcaattctttcaaa 36920171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 41715718 - 41715766
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 140  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  41715718 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 41715766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 44967453 - 44967413
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcactttta 126  Q
    ||||||||||||||||||| || ||||| ||||||||||||    
T  44967453 tgtattcaaacataaatcaattcacattcaactcactttta 44967413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 33843807 - 33843864
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    |||||||||||||||||||||  ||||||||||||| | ||||||||||| |||||||    
T  33843807 caaacataaatcactttacatccaactcacttttagccagaatcaattcaatcaaaat 33843864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 21743139 - 21743088
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 139  Q
    ||||||||| ||||||||||||||| |||| |||||||||| |||||||||||    
T  21743139 gtattcaaatataaatcactttaca-ttaattcacttttagcccgaatcaatt 21743088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 36150629 - 36150676
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaatt 139  Q
    |||||||||||||||||||||| |||||||||||| ||  ||||||||    
T  36150629 caaacataaatcactttacattcaactcacttttaatcaaaatcaatt 36150676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Complemental strand, 55638815 - 55638782
Alignment:
Q  93 aaacataaatcactttacatttaactcactttta 126  Q
    |||||||||||| |||||||||||||||||||||    
T  55638815 aaacataaatcaatttacatttaactcactttta 55638782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 55648054 - 55647993
Alignment:
Q  88 tattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    |||||||  |||| |||||||||||| || ||||||||||||  |||||||| |||||||||    
T  55648054 tattcaattataactcactttacattcaagtcacttttagtcataatcaattaattcaaaat 55647993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 17898117 - 17898085
Alignment:
Q  92 caaacataaatcactttacatttaactcacttt 124  Q
    |||||||||||||||||||||| ||||||||||    
T  17898117 caaacataaatcactttacattcaactcacttt 17898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 20712809 - 20712749
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaa 146  Q
    ||||| |||||| |||| ||||||| || |||||| |||||||| ||||||||||| ||||    
T  20712809 tgtatccaaacacaaataactttaccttcaactcatttttagtcggaatcaattcactcaa 20712749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 48550242 - 48550290
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 140  Q
    ||||||||||||| ||||||| ||||||||||||| ||  |||||||||    
T  48550242 caaacataaatcaatttacatctaactcacttttaatcaaaatcaattc 48550290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 16972059 - 16972005
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattc 140  Q
    |||||||||||| |||||| ||||| || ||||||||||||||| ||||||||||    
T  16972059 tgtattcaaacacaaatcattttaccttcaactcacttttagtctgaatcaattc 16972005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 19649229 - 19649268
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcactttta 126  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  19649229 gtatccaaacataaatcactttacattcaactcactttta 19649268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 38875250 - 38875211
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcactttt 125  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  38875250 tgtatccaaacataaatcactttacattgaactcactttt 38875211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 11038125 - 11038155
Alignment:
Q  23 ataattgattttgacatgtttggatgttctc 53  Q
    |||||||||||||||||||||||||||||||    
T  11038125 ataattgattttgacatgtttggatgttctc 11038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 13929849 - 13929819
Alignment:
Q  23 ataattgattttgacatgtttggatgttctc 53  Q
    |||||||||||||||||||||||||||||||    
T  13929849 ataattgattttgacatgtttggatgttctc 13929819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 36779439 - 36779487
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattc 140  Q
    ||||||||||| |||||||||| |||||||||||| ||  |||||||||    
T  36779439 caaacataaattactttacattcaactcacttttaatcaaaatcaattc 36779487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 34911039 - 34911095
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    |||||||||||||||| || || ||||||||||||||| ||||||||||| |||||||    
T  34911039 caaacataaatcactt-accttcaactcacttttagtcggaatcaattcactcaaaat 34911095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 28466985 - 28466916
Alignment:
Q  80 tgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||| ||||| |||||||||| |||| ||| || |||||| |||||| | ||||||||||| |||||||    
T  28466985 tgtaaatgtatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaat 28466916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 34736748 - 34736817
Alignment:
Q  80 tgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||| ||||| |||||||||| |||| ||| || |||||| |||||| | ||||||||||| |||||||    
T  34736748 tgtaaatgtatccaaacataaaccactataccttcaactcaattttagccagaatcaattcactcaaaat 34736817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 19261023 - 19260995
Alignment:
Q  25 aattgattttgacatgtttggatgttctc 53  Q
    |||||||||||||||||||||||||||||    
T  19261023 aattgattttgacatgtttggatgttctc 19260995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 29409321 - 29409257
Alignment:
Q  83 aactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaa 147  Q
    |||||||| ||||||||||||| || ||||  |||||||||||| ||  ||||||||| ||||||    
T  29409321 aactgtatccaaacataaatcaattcacatcaaactcacttttaatcaaaatcaattctttcaaa 29409257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 34620963 - 34621039
Alignment:
Q  73 acttttatgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    |||||||  ||| ||||| ||||||||||||||||||| || |||||| || ||| | ||||| ||||| |||||||    
T  34620963 acttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaat 34621039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 34748400 - 34748476
Alignment:
Q  73 acttttatgtaactgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    |||||||  ||| ||||| ||||||||||||||||||| || |||||| || ||| | ||||| ||||| |||||||    
T  34748400 acttttacataaatgtatccaaacataaatcactttaccttcaactcaattctagccagaatccattcactcaaaat 34748476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 3776612 - 3776669
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcatt 143  Q
    ||||| ||| |||||||||||||||||| |||||| |||||| | |||||||||||||    
T  3776612 tgtatccaagcataaatcactttacattcaactcaattttagccagaatcaattcatt 3776669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 37335029 - 37334976
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 139  Q
    |||||||| |||||||||||||||| || |||||| |||||||| |||||||||    
T  37335029 tgtattcagacataaatcactttaccttcaactcaattttagtcggaatcaatt 37334976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 7012675 - 7012714
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcactttta 126  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  7012675 gtatccaaacataaatcactttacattcaactcactttta 7012714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 31084241 - 31084304
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||| ||||||||||||| || ||||| |||||||||||| ||  ||||||||| ||||||||    
T  31084241 tgtatccaaacataaatcaattcacattcaactcacttttaatcaaaatcaattctttcaaaat 31084304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 124
Target Start/End: Complemental strand, 35132262 - 35132231
Alignment:
Q  93 aaacataaatcactttacatttaactcacttt 124  Q
    ||||||||||||||||||||||||||||||||    
T  35132262 aaacataaatcactttacatttaactcacttt 35132231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 44225600 - 44225639
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcactttta 126  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  44225600 gtatccaaacataaatcactttacattaaactcactttta 44225639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 10852774 - 10852740
Alignment:
Q  92 caaacataaatcactttacatttaactcactttta 126  Q
    |||||||||||||||||||||| ||||||||||||    
T  10852774 caaacataaatcactttacattcaactcactttta 10852740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 23918882 - 23918916
Alignment:
Q  92 caaacataaatcactttacatttaactcactttta 126  Q
    |||||||||||||||||||||| ||||||||||||    
T  23918882 caaacataaatcactttacattcaactcactttta 23918916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 24916581 - 24916627
Alignment:
Q  93 aaacataaatcactttacatttaactcacttttagtccgaatcaatt 139  Q
    |||||||||||| |||||||| ||||||||||||| | |||||||||    
T  24916581 aaacataaatcattttacattcaactcacttttagcctgaatcaatt 24916627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 42644302 - 42644336
Alignment:
Q  92 caaacataaatcactttacatttaactcactttta 126  Q
    |||||||||||||||||||||| ||||||||||||    
T  42644302 caaacataaatcactttacattcaactcactttta 42644336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 29252186 - 29252129
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||||||||||| |||||| |||||||||||||  ||  |||||||||| |||||||    
T  29252186 caaacataaatcaatttacaattaactcacttttgatcaaaatcaattcaatcaaaat 29252129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 35951128 - 35951180
Alignment:
Q  93 aaacataaatcactttacatttaactcacttttagtccgaatcaattcattca 145  Q
    ||||||||||| ||||||||| || |||  ||||||| |||||||||||||||    
T  35951128 aaacataaatccctttacattcaattcaactttagtcggaatcaattcattca 35951180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 4119422 - 4119381
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttag 127  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  4119422 tgtattcaaacataaatcactttacattagactcacttttag 4119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 10918652 - 10918709
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    |||||||||||||||||||||| ||||||||||||  |  |||||||||| |||||||    
T  10918652 caaacataaatcactttacattcaactcacttttatccaaaatcaattcagtcaaaat 10918709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 15220856 - 15220804
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaat 138  Q
    ||||| |||||||||||||||||||||| ||||||||||| |||  |||||||    
T  15220856 tgtatccaaacataaatcactttacattcaactcacttttcgtcataatcaat 15220804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 3853943 - 3854006
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||| ||||||||||||| |||||||| |||||||||||| ||  |||||||||  |||||||    
T  3853943 tgtatccaaacataaatcaatttacattcaactcacttttaatcaaaatcaattctatcaaaat 3854006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 23359994 - 23359955
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcactttta 126  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  23359994 gtatccaaacataaatcactttacattcaactcactttta 23359955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 123
Target Start/End: Original strand, 44439350 - 44439381
Alignment:
Q  92 caaacataaatcactttacatttaactcactt 123  Q
    ||||||||||||||||||||||||||||||||    
T  44439350 caaacataaatcactttacatttaactcactt 44439381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 149
Target Start/End: Original strand, 30503303 - 30503360
Alignment:
Q  92 caaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    |||||| |||||| ||||| || |||| |||||||||| ||||||||||| |||||||    
T  30503303 caaacaaaaatcagtttaccttcaactaacttttagtcagaatcaattcactcaaaat 30503360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 42973014 - 42973051
Alignment:
Q  81 gtaactgtattcaaacataaatcactttacatttaact 118  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  42973014 gtaaatgtattcaaacataaattactttacatttaact 42973051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 4908880 - 4908920
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcactttta 126  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  4908880 tgtatccaaacataaatcactttacatgaaactcactttta 4908920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 22882875 - 22882931
Alignment:
Q  93 aaacataaatcactttacatttaactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||||||||||||| |||||||||| | |||||  | ||||||||| |||||||||    
T  22882875 aaacataaatcacttaacatttaacttatttttatcctgaatcaatttattcaaaat 22882931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 33502324 - 33502368
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcacttttagtcc 130  Q
    ||||| |||||| ||||||||||||||| |||| |||||||||||    
T  33502324 tgtatccaaacacaaatcactttacattcaacttacttttagtcc 33502368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 38600508 - 38600468
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcactttta 126  Q
    ||||||||||||||||||| |||||||  ||||||||||||    
T  38600508 tgtattcaaacataaatcaatttacatcaaactcactttta 38600468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 27374288 - 27374236
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcacttttagtccgaatcaatt 139  Q
    |||||||| || |||||||||||| ||||||| |||||||||| |||||||||    
T  27374288 gtattcaatcacaaatcactttacttttaacttacttttagtcggaatcaatt 27374236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 22811075 - 22811114
Alignment:
Q  87 gtattcaaacataaatcactttacatttaactcactttta 126  Q
    |||| |||||||||||||||||||||| ||||||||||||    
T  22811075 gtatccaaacataaatcactttacattcaactcactttta 22811114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 39514933 - 39514976
Alignment:
Q  100 aatcactttacatttaactcacttttagtccgaatcaattcatt 143  Q
    ||||||||||||||||||||| |||||| | |||||||||||||    
T  39514933 aatcactttacatttaactcaattttagccagaatcaattcatt 39514976  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 53
Target Start/End: Complemental strand, 12208985 - 12208955
Alignment:
Q  23 ataattgattttgacatgtttggatgttctc 53  Q
    |||||||||||||||||||||||||||||||    
T  12208985 ataattgattttgacatgtttggatgttctc 12208955  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 34454082 - 34454048
Alignment:
Q  115 aactcacttttagtccgaatcaattcattcaaaat 149  Q
    ||||||||||||||| |||||||||||||||||||    
T  34454082 aactcacttttagtcagaatcaattcattcaaaat 34454048  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 24036623 - 24036660
Alignment:
Q  88 tattcaaacataaatcactttacatttaactcactttt 125  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  24036623 tattcaaacataaatcattttacattcaactcactttt 24036660  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 43438656 - 43438619
Alignment:
Q  89 attcaaacataaatcactttacatttaactcactttta 126  Q
    ||||||||||| || |||||||||||||||||||||||    
T  43438656 attcaaacatagataactttacatttaactcactttta 43438619  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Original strand, 7667751 - 7667783
Alignment:
Q  91 tcaaacataaatcactttacatttaactcactt 123  Q
    ||||||||||||||||||||||| |||||||||    
T  7667751 tcaaacataaatcactttacattcaactcactt 7667783  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 13224760 - 13224732
Alignment:
Q  23 ataattgattttgacatgtttggatgttc 51  Q
    |||||||||||||||||||||||||||||    
T  13224760 ataattgattttgacatgtttggatgttc 13224732  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 14299416 - 14299456
Alignment:
Q  86 tgtattcaaacataaatcactttacatttaactcactttta 126  Q
    |||||||||||| |||||||||||| || ||||||||||||    
T  14299416 tgtattcaaacacaaatcactttaccttcaactcactttta 14299456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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