View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11007_high_2 (Length: 708)
Name: NF11007_high_2
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 42867129 - 42867582
Alignment:
| Q |
18 |
cctataaaagttgattctctaatatcttttcgttctttccatttccctcctcctttgcc-agttttcttctccatttccttcatcatgtccgatcactct |
116 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42867129 |
cctataaaaattcattctctaatatcttttcgttctttccatttccctcctcctttgcccagttttcttctccatttccttcatcatgtccgatcactcc |
42867228 |
T |
|
| Q |
117 |
gccgatcttcctgctgccgccgccggtaatttcactttctccgtttctcattcttttcatcacttcaatttatttaaccctagtaactttatcaactact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42867229 |
gccgatcttcctgctgccgccgccggtaatttcactttctccgtttctcattcttttcatcacttcaatttatttaaccctagtaactttatcaactact |
42867328 |
T |
|
| Q |
217 |
attttacctataatattaattcaaaatcattgtcatttgattgaaacctaaaaacttaggtctgaattatactgtttcctttttcttgtagctcttagtg |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42867329 |
attttacctaaaatattaattcaaaatcattgtcatttgattgaaacctaaaaacttaggtctaaattatactgtttcctttttcttgtagctcttagtg |
42867428 |
T |
|
| Q |
317 |
ctgaagatcgtgccggtctcgtcaatgcactcaaagtaagtttttaactcatatcatgctgaatttatctcagtaatcagaattttggaatcaattgttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42867429 |
ctgaagatcgtgccggtctcgtcaatgcactcaaagtaagtttttaactcatatcatgctgaatttatctcagtaatcagaattttggaatcaattgttt |
42867528 |
T |
|
| Q |
417 |
cttaatcaaccacgatgattgcaaaactatagtgttattatgatggatatatta |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42867529 |
cttaatcaaccacgatgattgcaaaactatagtgttattatgatggatatatta |
42867582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 544 - 698
Target Start/End: Original strand, 42867656 - 42867810
Alignment:
| Q |
544 |
aggataagcttcagctcttggctggggaccgcgtggatgtcatggaaacactttcgcccaatgtcaagcaacgcgtcgaggttctgaaagttttgcaggt |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42867656 |
aggataagcttcagctcttggctggggaccgcgtggatgtcatggaaacactttcgcccaatgtcaagcaacgcgtcgaggttctgaaagttttgcaggt |
42867755 |
T |
|
| Q |
644 |
tcgatcatcgtcctgctatctattggtgtctcatgttagcgtgttttagtctgtg |
698 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42867756 |
tcgataatcgtcctgctatctattggtgtctcatgttagcgtgttttagtgtgtg |
42867810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University