View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11007_high_9 (Length: 352)
Name: NF11007_high_9
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 25038284 - 25037936
Alignment:
| Q |
1 |
aggtttatgcatccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaagagcaatctaagattc |
100 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25038284 |
aggtttatgcagccactgacaacaggagagtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccagagagcaatctaagattc |
25038185 |
T |
|
| Q |
101 |
ttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaatataccacaatcaaataatgacacaggcacacctggatattt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25038184 |
ttattggctcatttgattttattggaatcaattactacacctccaattatgctgctaatataccacaatcaaataatgacacaggcacacctggatattt |
25038085 |
T |
|
| Q |
201 |
caaggatactcatgtcaatttaacaagtaagaacaccttgatcacaactccttatgaagaattgaaataaccttaatccattgatagaaaaatcaatttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25038084 |
caaggatactcatgtcaatttaacaagtaagaacaccttgatcacaactccttatgaagaactgaaataaccttaatccattgatagaaaaatcaatttc |
25037985 |
T |
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| Q |
301 |
tcacatgccttcctttgattttctattccatgaaaagaagataattcat |
349 |
Q |
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| T |
25037984 |
tcacatgccttcctttgattttctattccatggaaagaagataattcat |
25037936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 25017179 - 25016917
Alignment:
| Q |
1 |
aggtttatgcatccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaagagcaatctaagattc |
100 |
Q |
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||||||||||| ||| |||| ||||||| |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
25017179 |
aggtttatgcagccattgaccacaggagagtatccattaagcatggtgtcttttgcgggaaatcgtttaccaaagttcaccaaagagcaatctaagatgc |
25017080 |
T |
|
| Q |
101 |
ttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaatataccacaatcaaataatgacacaggcacacctggatattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | || | ||| | |
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| T |
25017079 |
ttattggctcatttgattttattggaatcaattactacacctccaaatatgctgccaatataccacaatcaaatagcgacacaagtgatccaagctatct |
25016980 |
T |
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| Q |
201 |
caaggatactcatgtcaatttaacaagtaagaacaccttgatcacaactccttatgaagaatt |
263 |
Q |
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|||||||||||||||||| || ||||||||||| |||||| | |||||||||||||||||||| |
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| T |
25016979 |
caaggatactcatgtcaaatttacaagtaagaataccttgtttacaactccttatgaagaatt |
25016917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 4624091 - 4623933
Alignment:
| Q |
1 |
aggtttatgcatccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaagagcaatctaagattc |
100 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||||| ||||| ||||||||||||||||| || ||||||||||||| |||||||||||||| || |
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| T |
4624091 |
aggtttatacagccactgacaacaggagagtatccagcaagcttggtgtcttatgtgggagataagctaccaaagttcactgcagagcaatctaagagtc |
4623992 |
T |
|
| Q |
101 |
ttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaat |
159 |
Q |
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||||||| |||| |||||||||||||||||||||||||||| || |||||||||||| |
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| T |
4623991 |
ttattgggtcatatgattttattggaatcaattactacaccagcatgtatgctgccaat |
4623933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 4599760 - 4599605
Alignment:
| Q |
1 |
aggtttatgcatccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaagagcaatctaagattc |
100 |
Q |
| |
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|||||||| || ||||||||||| |||| ||||||| ||| ||||||||||| ||| | || |||||||||||||| ||||||||||||| | || |
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| T |
4599760 |
aggtttatacagccactgacaaccggagagtatccagcaaacatggtgtctttcgtgaaagat---ttaccaaagttcactgaagagcaatctaaaagtc |
4599664 |
T |
|
| Q |
101 |
ttattggctcatttgattttattggaatcaattactacacctccaattatgctgccaat |
159 |
Q |
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||||||| |||| |||||||||||||||||||||||||||| ||| |||||||||||| |
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| T |
4599663 |
ttattgggtcatatgattttattggaatcaattactacaccaccatgtatgctgccaat |
4599605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 18804731 - 18804875
Alignment:
| Q |
13 |
ccactgacaacaggagcgtatccatcaagcatggtgtcttatgtgggaaatcgtttaccaaagttcaccaaagagcaatctaagattcttattggctcat |
112 |
Q |
| |
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|||||||||||||||| ||| ||| |||||||||||||| || ||| || |||||||||||||| |||||||||| | ||| ||||||||| |||| |
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| T |
18804731 |
ccactgacaacaggagagtacccagcaagcatggtgtctaatttggaaaca---ttaccaaagttcactaaagagcaatatgagagtcttattgggtcat |
18804827 |
T |
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| Q |
113 |
ttgattttattggaatcaattactacacctccaattatgctgccaata |
160 |
Q |
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|||||||||||||| |||||||||||||||| ||||||| ||||| |
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| T |
18804828 |
acgattttattggaattaattactacacctccacgtatgctgtcaata |
18804875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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