View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11007_low_10 (Length: 351)
Name: NF11007_low_10
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 47 - 336
Target Start/End: Complemental strand, 1359149 - 1358860
Alignment:
| Q |
47 |
tctcatagcatatagactctagtatcttggtttgtaactatcacttgtaaattttaccatcgacgcactcaatcaatcaaacgacttattttatgtttat |
146 |
Q |
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| T |
1359149 |
tctcatagcatatagactctagtatcttggtttgtaactatcacttgtaaattttaccatcgacacactcaatcaatcaaacaacttattttatgtttat |
1359050 |
T |
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| Q |
147 |
atgcctctaacattttacttatatttttcttcgcatttttgttcttaaaattatttaccccatttaatactctttgaagtagttaaagaactcgtagcat |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1359049 |
atgcctctaacattttacttatatttttcttcgcattttagttcttaaaattatttaccccatttaatactctttgaagtagttaaaggactcgtagcat |
1358950 |
T |
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| Q |
247 |
tgacccagttcttctctctcgacctaatcgtttgaagaactaatactctttgaagtagttaaaatctcatagcatagagacgaagttcat |
336 |
Q |
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|||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1358949 |
tgacgcagttcttttctattgacctaatcgtttgaagaactaatactctttgaagtagttaaaatctcatagcatagagacgaaattcat |
1358860 |
T |
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