View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11007_low_11 (Length: 349)
Name: NF11007_low_11
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 5178349 - 5178678
Alignment:
| Q |
1 |
aaaacaagagtgagagacaaatattgctacaaaatgcacaacttttctaaggagaatagaatcaagctaataagattgtttgaccaaaaatatacacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5178349 |
aaaacaagagtgagagacaaatattgctacaaaatgcacaacttttctaaggagaatagaatcaaggtaataagattgtttgaccaaaaatatacacata |
5178448 |
T |
|
| Q |
101 |
taaaagaggaaataatagttgctttaattcttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5178449 |
taaaagaggaaataatagttgctttaatttttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatc |
5178548 |
T |
|
| Q |
201 |
tacctgtccacctatgtctgataaaccaacattcattataaatcaagcaacaaaaaactcgaaagaagatgaacagttttaaattgtagtctgcaatata |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5178549 |
tacctgtccacctatgtctgataaaccaacattcattataaatcaagcaacaaaaaactcgaaagaagatgaacagttttaaattgtagtccgcaatata |
5178648 |
T |
|
| Q |
301 |
aaggattttaaggtctgcgatctgcgtcat |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5178649 |
aaggattttaaggtctgcgatctgcgtcat |
5178678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 13683499 - 13683566
Alignment:
| Q |
149 |
ctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatg |
216 |
Q |
| |
|
|||||||| || ||| || |||||||||||||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
13683499 |
ctagcttgaccttctcttctacagctgttatcccatagatgggcttcatatcttcctgtccatctatg |
13683566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 226
Target Start/End: Complemental strand, 40189561 - 40189462
Alignment:
| Q |
127 |
attcttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatgtctgataaac |
226 |
Q |
| |
|
|||||||||||| |||||||||| |||||| ||||| || || ||||| ||||||| ||||||||||||||| || ||||||||||| || |||||| |
|
|
| T |
40189561 |
attcttaccttgtcttccttttctgctttggccttctttcttgcaactgttgtcccataaatgagcttcatatctcccagtccacctatgcctaataaac |
40189462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 28590727 - 28590767
Alignment:
| Q |
170 |
cagctgttatcccatagatgagcttcatatctacctgtcca |
210 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
28590727 |
cagctgttatcccatagatgtgcttcaaatctacctgtcca |
28590767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 223
Target Start/End: Original strand, 4847017 - 4847067
Alignment:
| Q |
173 |
ctgttatcccatagatgagcttcatatctacctgtccacctatgtctgata |
223 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| ||||| ||||| |||||| |
|
|
| T |
4847017 |
ctgttatcccataaatgtgcttcatatctaccggtccatctatgcctgata |
4847067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 30619947 - 30620032
Alignment:
| Q |
131 |
ttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatg |
216 |
Q |
| |
|
||||||||| ||||||| | || || |||||| || |||| || |||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
30619947 |
ttaccttgccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
30620032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University