View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11007_low_12 (Length: 315)
Name: NF11007_low_12
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_low_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 50751668 - 50751360
Alignment:
| Q |
7 |
gatcaatccagaggatgtgtcgagttggcttgcattggaagaaactgaagatgtcaacatggtgcaaacccaaagagattcatggaagaaatgtgatttc |
106 |
Q |
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| T |
50751668 |
gatcaatccagaggatgtgtcgagttggcttgcattggaagaaactgaagatgtcaacatggtgcaaacccaaagagattcatggaagaaatgtgatttc |
50751569 |
T |
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| Q |
107 |
tcagttggaaaatggatatttgatcaaacctaccctctctatgattccaactgtccttatctcaccactgcagttacttgtcaaaagaatggacggccag |
206 |
Q |
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| T |
50751568 |
tcagttggaaaatggatatttgatcaaacctaccctctctatgattccaactgtccttatctcaccactgcagttacttgtcaaaagaatggacggccag |
50751469 |
T |
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| Q |
207 |
attcggattatgagaaatggaagtggaagccattaggttgttccatcccaaggtgatgatgataacattaatttctcaaattgctacctttttattttct |
306 |
Q |
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| T |
50751468 |
attcggattatgagaaatggaagtggaagccattaggttgttccatcccaaggtgatgatgataacattaatttctcacattgctacctttttgttttct |
50751369 |
T |
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| Q |
307 |
tataattgc |
315 |
Q |
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| T |
50751368 |
tataattgc |
50751360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 97 - 260
Target Start/End: Complemental strand, 19414875 - 19414712
Alignment:
| Q |
97 |
atgtgatttctcagttggaaaatggatatttgatcaaacctaccctctctatgattccaactgtccttatctcaccactgcagttacttgtcaaaagaat |
196 |
Q |
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| T |
19414875 |
atgtgacttttctgttggaaaatgggtttatgatgaatcttaccctctttatgatcctaactgcccttatcttagtactgcagttacttgtcagaagaat |
19414776 |
T |
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| Q |
197 |
ggacggccagattcggattatgagaaatggaagtggaagccattaggttgttccatcccaaggt |
260 |
Q |
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| T |
19414775 |
gggaggccagattccgattatgagaagtggaagtggaagccaagtggttgctccatcccaaggt |
19414712 |
T |
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