View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11007_low_13 (Length: 284)

Name: NF11007_low_13
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11007_low_13
NF11007_low_13
[»] chr6 (14 HSPs)
chr6 (99-241)||(1693211-1693353)
chr6 (24-88)||(3203666-3203730)
chr6 (9-88)||(11073456-11073535)
chr6 (1-81)||(24089698-24089780)
chr6 (24-88)||(2950847-2950911)
chr6 (43-83)||(16199120-16199160)
chr6 (9-74)||(17220427-17220494)
chr6 (22-81)||(6560659-6560718)
chr6 (35-70)||(26478534-26478569)
chr6 (22-81)||(31398228-31398287)
chr6 (24-77)||(3203752-3203805)
chr6 (7-88)||(33472681-33472762)
chr6 (24-88)||(16121046-16121110)
chr6 (21-81)||(31996577-31996637)
[»] chr7 (23 HSPs)
chr7 (1-89)||(47708395-47708483)
chr7 (1-89)||(3967699-3967787)
chr7 (1-76)||(3105953-3106028)
chr7 (1-88)||(2456331-2456418)
chr7 (1-81)||(47534972-47535052)
chr7 (22-80)||(3967784-3967842)
chr7 (25-88)||(34750410-34750474)
chr7 (1-81)||(47712481-47712561)
chr7 (35-89)||(2456673-2456727)
chr7 (43-88)||(34750323-34750368)
chr7 (24-77)||(35436307-35436360)
chr7 (21-78)||(37491278-37491335)
chr7 (37-81)||(10414941-10414985)
chr7 (35-91)||(12423737-12423793)
chr7 (21-77)||(19688105-19688161)
chr7 (1-81)||(36547589-36547668)
chr7 (22-81)||(34275193-34275252)
chr7 (46-83)||(7701188-7701225)
chr7 (1-78)||(12274814-12274891)
chr7 (7-68)||(32697082-32697143)
chr7 (22-62)||(34565006-34565046)
chr7 (44-88)||(34670348-34670392)
chr7 (1-81)||(38238842-38238922)
[»] chr5 (16 HSPs)
chr5 (1-88)||(42910770-42910857)
chr5 (1-81)||(38294683-38294768)
chr5 (13-89)||(38294774-38294851)
chr5 (22-81)||(14144329-14144388)
chr5 (22-88)||(42910707-42910773)
chr5 (22-86)||(25792925-25792989)
chr5 (35-94)||(12645440-12645499)
chr5 (22-81)||(13356216-13356275)
chr5 (47-89)||(14153363-14153405)
chr5 (18-88)||(14751200-14751270)
chr5 (39-81)||(18033451-18033493)
chr5 (43-81)||(41180313-41180351)
chr5 (43-88)||(34445256-34445301)
chr5 (1-81)||(71261-71341)
chr5 (43-79)||(9707139-9707175)
chr5 (43-87)||(25694215-25694259)
[»] chr1 (27 HSPs)
chr1 (5-88)||(748711-748794)
chr1 (1-76)||(39617315-39617390)
chr1 (1-81)||(15057659-15057739)
chr1 (22-78)||(52923402-52923458)
chr1 (22-81)||(14214608-14214667)
chr1 (22-84)||(6283614-6283676)
chr1 (34-88)||(42074224-42074278)
chr1 (35-88)||(5091762-5091815)
chr1 (43-88)||(38758400-38758445)
chr1 (39-84)||(46829968-46830013)
chr1 (39-88)||(50308623-50308672)
chr1 (22-77)||(19175667-19175722)
chr1 (39-78)||(24115756-24115795)
chr1 (22-81)||(36040148-36040207)
chr1 (22-72)||(5246153-5246203)
chr1 (43-81)||(6283537-6283575)
chr1 (7-81)||(18569764-18569838)
chr1 (35-89)||(24419625-24419679)
chr1 (43-81)||(28725566-28725604)
chr1 (43-81)||(36040246-36040284)
chr1 (20-81)||(28725468-28725529)
chr1 (35-88)||(39931134-39931187)
chr1 (1-81)||(2122572-2122651)
chr1 (35-79)||(4604930-4604974)
chr1 (24-88)||(17468179-17468243)
chr1 (36-88)||(38173511-38173563)
chr1 (24-88)||(38834606-38834670)
[»] chr8 (19 HSPs)
chr8 (4-82)||(12736356-12736434)
chr8 (24-83)||(24052909-24052968)
chr8 (22-84)||(7410644-7410706)
chr8 (21-81)||(15037752-15037812)
chr8 (4-88)||(24052823-24052907)
chr8 (7-63)||(33743511-33743567)
chr8 (22-81)||(28882743-28882802)
chr8 (22-81)||(31505117-31505176)
chr8 (46-88)||(6197929-6197971)
chr8 (34-88)||(30857320-30857374)
chr8 (43-81)||(31505040-31505078)
chr8 (54-84)||(41387873-41387903)
chr8 (43-84)||(13496434-13496475)
chr8 (47-88)||(13841843-13841884)
chr8 (24-81)||(31271613-31271670)
chr8 (24-84)||(10117051-10117111)
chr8 (21-81)||(10934605-10934665)
chr8 (24-88)||(27988074-27988138)
chr8 (24-88)||(28045376-28045440)
[»] chr4 (14 HSPs)
chr4 (6-79)||(21208637-21208710)
chr4 (1-73)||(31089895-31089968)
chr4 (3-78)||(49229226-49229301)
chr4 (1-84)||(29006834-29006917)
chr4 (24-89)||(26752807-26752873)
chr4 (24-88)||(22235341-22235405)
chr4 (24-88)||(35009100-35009164)
chr4 (22-81)||(54164892-54164951)
chr4 (22-77)||(31089965-31090022)
chr4 (35-88)||(7277508-7277561)
chr4 (22-79)||(34763061-34763118)
chr4 (44-88)||(10065061-10065105)
chr4 (22-81)||(21790184-21790243)
chr4 (1-81)||(24851469-24851548)
[»] chr2 (19 HSPs)
chr2 (1-78)||(44587701-44587778)
chr2 (24-88)||(23143567-23143631)
chr2 (24-88)||(23555357-23555421)
chr2 (25-76)||(40363226-40363277)
chr2 (22-88)||(44587638-44587704)
chr2 (5-81)||(25625910-25625986)
chr2 (35-88)||(472504-472557)
chr2 (22-81)||(2577676-2577736)
chr2 (1-52)||(2577733-2577784)
chr2 (23-81)||(13333527-13333585)
chr2 (39-81)||(15119873-15119915)
chr2 (43-89)||(30429063-30429109)
chr2 (35-88)||(20218541-20218594)
chr2 (43-88)||(23143481-23143526)
chr2 (43-88)||(23555271-23555316)
chr2 (24-88)||(20218627-20218691)
chr2 (23-84)||(23738398-23738461)
chr2 (21-81)||(27331837-27331897)
chr2 (1-81)||(32316476-32316555)
[»] chr3 (20 HSPs)
chr3 (1-88)||(39682667-39682754)
chr3 (21-88)||(39964290-39964357)
chr3 (1-81)||(39964353-39964435)
chr3 (28-84)||(36447866-36447922)
chr3 (1-86)||(27161503-27161591)
chr3 (1-88)||(105367-105453)
chr3 (36-89)||(26331309-26331362)
chr3 (1-81)||(12708739-12708818)
chr3 (22-81)||(8439260-8439319)
chr3 (22-81)||(25881215-25881274)
chr3 (22-81)||(34036548-34036607)
chr3 (22-77)||(39682615-39682670)
chr3 (43-81)||(25881138-25881176)
chr3 (35-81)||(36270081-36270127)
chr3 (35-81)||(50626781-50626827)
chr3 (43-88)||(27786451-27786496)
chr3 (22-79)||(50603592-50603649)
chr3 (21-70)||(51880547-51880596)
chr3 (24-88)||(8036531-8036595)
chr3 (46-98)||(8504835-8504887)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-81)||(4376-4455)
[»] scaffold0018 (1 HSPs)
scaffold0018 (46-89)||(135879-135922)
[»] scaffold0006 (1 HSPs)
scaffold0006 (33-85)||(36425-36476)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 1693211 - 1693353
Alignment:
Q  99 taaggtgttgtttcttgtgaggttgaactttgtgagggaaacttcagttatgtggaagttgagattagagggaccaaaggtgatgactgctaaagagatc 198  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||| |||| |||||| | ||||||| |||||||| ||||||    
T  1693211 taaggtcttgtttcttgtgaggttgaactttgtgagggaagcttcggttatgtggaaattgatattaaagggacgataggtgatcactgctaaggagatc 1693310  T
Q  199 aacgagcaagcagatgaaagaaaaaggagatacatgattgtga 241  Q
    ||| | ||| || ||||||||||||| ||| ||||||||||||    
T  1693311 aaccaacaaacaaatgaaagaaaaagtagagacatgattgtga 1693353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 3203730 - 3203666
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| ||||| ||| |||||||||| | | |||||||||||||||||||||||| ||||||    
T  3203730 atacatcattcattgaatgaacctaaaaaattgatttttgcttataatagtgaccggagggagta 3203666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 11073535 - 11073456
Alignment:
Q  9 tatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||||| ||||| ||||||||||| || || |||| ||||| | |||| |||||||||||||||| | ||||||    
T  11073535 tatattaatggtcacatatatcactcattctattaatctaacaagtaatattttacttataatagtgaccgaaaggagta 11073456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 24089780 - 24089698
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtag--ttttttgcttataatagtgaccgga 81  Q
    |||||||| ||||||  | ||| |||||||| | ||||||| |||||||||||| |  |||||||||||||||||||||||||    
T  24089780 atgtggtcaatattatagattagatacatcaattattcaatgaacctaaaaagtggttttttttgcttataatagtgaccgga 24089698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 2950847 - 2950911
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | |||| ||||||||||||||| | || |||||||||||| |||||||||| ||||    
T  2950847 atacatcatttattcgataaacctaaaaagttgattattgcttataataatgaccggatgaagta 2950911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 16199160 - 16199120
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatg 83  Q
    ||||||||| |||| ||||||||||||||||||||||||||    
T  16199160 aacctaaaatgtagatttttgcttataatagtgaccggatg 16199120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 17220494 - 17220427
Alignment:
Q  9 tatattaatggttacatacatcactcattcaataaacctaaaaagtag--ttttttgcttataatagt 74  Q
    ||||||||||   |||||||| |||||||||| ||||||||||| |||  ||||||||||||||||||    
T  17220494 tatattaatgaccacatacataactcattcaagaaacctaaaaaatagttttttttgcttataatagt 17220427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 6560718 - 6560659
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | | | ||| ||||||||| ||||||||||||||||| |||||||||||    
T  6560718 acatacatcattaaatgaatgaacctaaaatgtagttttttgcttatattagtgaccgga 6560659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 70
Target Start/End: Original strand, 26478534 - 26478569
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataa 70  Q
    ||||||||||||||||||||||| ||||||||||||    
T  26478534 attcaataaacctaaaaagtagtgttttgcttataa 26478569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 31398287 - 31398228
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | | | ||| ||||||||| ||||||||||||||||| |||||||||||    
T  31398287 acatacatcattaaatgaatgaacctaaaatgtagttttttgcttatattagtgaccgga 31398228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 3203752 - 3203805
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgac 77  Q
    |||||||| | ||| ||| |||||||||||| | ||||||||||||||||||||    
T  3203752 atacatcatttattaaatgaacctaaaaagttgatttttgcttataatagtgac 3203805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 33472762 - 33472681
Alignment:
Q  7 tctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||||| | |||||||||||||||| ||| ||  |||||| ||  ||||| |||||||||||| | ||| ||||||    
T  33472762 tctatattaatgatcacatacatcactcatttaatgaatttaaaaaatatgtttttacttataatagtggcgggagggagta 33472681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 16121046 - 16121110
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | ||| ||| || ||||||||| | ||||||||||||||||||| |||| ||||||    
T  16121046 atacatcatttatttaatgaatctaaaaagttgatttttgcttataatagtgatcggagggagta 16121110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 31996577 - 31996637
Alignment:
Q  21 tacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||||| | | | ||| ||||||||| || | ||||||||||||||||||||||||    
T  31996577 tacatacatcatttaataaatgaacctaaaatgttgatttttgcttataatagtgaccgga 31996637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 47708483 - 47708395
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagtaa 89  Q
    ||||||||||||||||||   |||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||    
T  47708483 atgtggtctatattaatgacaacatacatcactcattcaatgaacttaaaaagtagttttttgcttataatagtgatcggatggagtaa 47708395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3967787 - 3967699
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagtaa 89  Q
    |||||| ||||||||||||| |  ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||    
T  3967787 atgtggactatattaatggtcaattacatcactcattcaatgaacctaaaaagtagttttttgcttataatagtgatcggagggagtaa 3967699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3106028 - 3105953
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtga 76  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||||||| || ||||||||||||||||||||    
T  3106028 atgtggtctatattaatggtcatatacaacactcattcaataaacctaaaaaataattttttgcttataatagtga 3105953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 2456418 - 2456331
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||||||||||   |||||||||| | ||||||| |||||||||||||| ||||||||||||||||||| |||| ||||||    
T  2456418 atgtggtctatattaatgtccacatacatcattaattcaatgaacctaaaaagtagatttttgcttataatagtgatcggagggagta 2456331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 47535052 - 47534972
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||| |||||||||   | |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||    
T  47535052 atgtggtccatattaatgacaagatacatcactcatttaatgaacttaaaaagtagttttttgcttataatagtgaccgga 47534972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 3967784 - 3967842
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgg 80  Q
    |||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||    
T  3967784 acatacatcatttattcaatgaacctaaaaagtagttttttgcttataatagtgaccgg 3967842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 34750410 - 34750474
Alignment:
Q  25 tacatcactcattcaataaacctaaaaagtagtttt-ttgcttataatagtgaccggatggagta 88  Q
    ||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||    
T  34750410 tacatcacttattcaatgaacttaaaaagtagtttttttgcttataatagtgaccggagggagta 34750474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 47712561 - 47712481
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||| ||||||||||   | ||| |||||||||||||| ||| | |||| |||||||||||||||||||||| |||||    
T  47712561 atgtggtttatattaatgacaagatatatcactcattcaatgaacttcaaaaatagttttttgcttataatagtggccgga 47712481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 2456673 - 2456727
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagtaa 89  Q
    ||||||| || ||||||||||||||||| ||||||||||||||| || |||||||    
T  2456673 attcaatgaatctaaaaagtagttttttacttataatagtgaccagagggagtaa 2456727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 34750368 - 34750323
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||||||| ||||||||||||||||| |||||| ||||||    
T  34750368 aacctaaaaagtagatttttgcttataatagtaaccggagggagta 34750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 35436307 - 35436360
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgac 77  Q
    |||||||| | ||||||| |||||||||||| ||||||| ||||||||||||||    
T  35436307 atacatcaattattcaatgaacctaaaaagtggttttttacttataatagtgac 35436360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 37491335 - 37491278
Alignment:
Q  21 tacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgacc 78  Q
    ||||||||||| | ||| |||||| ||||||||||  |||||||||||||||||||||    
T  37491335 tacatacatcatttatttaataaatctaaaaagtaaatttttgcttataatagtgacc 37491278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 10414985 - 10414941
Alignment:
Q  37 tcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||    
T  10414985 tcaatgaacctaaaatgtagttttttgcttatattagtgaccgga 10414941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 12423737 - 12423793
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagtaact 91  Q
    ||||||| |||||||||||||  |||||||||||||  ||||||||||| |||||||    
T  12423737 attcaatgaacctaaaaagtacatttttgcttataaatgtgaccggatgaagtaact 12423793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 19688161 - 19688105
Alignment:
Q  21 tacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgac 77  Q
    ||||||||||| | ||| ||| ||||||||| ||| |||||||||||||||||||||    
T  19688161 tacatacatcatttattgaatgaacctaaaatgtatttttttgcttataatagtgac 19688105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 36547668 - 36547589
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||||||| | ||||||||||| || | | | ||| |||||||||  | ||||||||||||||||||||||||||    
T  36547668 atgtggtctatattta-ggttacatacaacatttaatgaatgaacctaaaatatggttttttgcttataatagtgaccgga 36547589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 34275252 - 34275193
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | | | ||| ||||||||| ||||||||||||||||| |||||||||||    
T  34275252 acatacatcattaaatgaatgaacctaaaatgtagttttttgcttatattagtgaccgga 34275193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Complemental strand, 7701225 - 7701188
Alignment:
Q  46 ctaaaaagtagttttttgcttataatagtgaccggatg 83  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  7701225 ctaaaatgtagatttttgcttataatagtgaccggatg 7701188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 12274891 - 12274814
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgacc 78  Q
    |||||||||||||||  ||  |||||||||| | ||| ||| ||| ||||| || | |||||||||||||||||||||    
T  12274891 atgtggtctatattataggccacatacatcatttattgaatgaacataaaatgtggatttttgcttataatagtgacc 12274814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 32697082 - 32697143
Alignment:
Q  7 tctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttat 68  Q
    |||| ||||||||| | |||||| ||||| | ||||||| |||||||||||||||| |||||    
T  32697082 tctacattaatggtcatatacattactcaattaataaacataaaaagtagttttttccttat 32697143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 34565006 - 34565046
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagtttttt 62  Q
    |||||||||||| ||||||| |||||||||||| |||||||    
T  34565006 acatacatcacttattcaattaacctaaaaagtggtttttt 34565046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 34670392 - 34670348
Alignment:
Q  44 acctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||| |||||||||||||||  ||||||||| ||||||    
T  34670392 acctaaaaagttgttttttgcttataaatgtgaccggagggagta 34670348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 38238842 - 38238922
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||| |||||   || |||||||||| | ||| |||  | ||||||||||| |||||||||||| |||||||||||    
T  38238842 atgtggtctttattatatgtcacatacatcattaattgaatgtatctaaaaagtagatttttgcttatattagtgaccgga 38238922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 42910770 - 42910857
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||||| |||||  |||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||    
T  42910770 atgtggtctatataaatggccacattcatcactcattcaataaacctaaaaagtagtattttacttataatagtgaccggagggagta 42910857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 38294768 - 38294683
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtag-----ttttttgcttataatagtgaccgga 81  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||| |||||||     |||||||||||||||| ||||||||    
T  38294768 atgtggtctatattaatggtcacatacatcactcattcaattaacctataaagtagtagttttttttgcttataataatgaccgga 38294683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 38294774 - 38294851
Alignment:
Q  13 ttaatggttacatacatcactcattcaataaacctaaaaagtag-ttttttgcttataatagtgaccggatggagtaa 89  Q
    |||||||||||| ||||||||||||||| ||| ||| ||||||| |||||||||||||||| |||||||| |||||||    
T  38294774 ttaatggttacaaacatcactcattcaagaaatctataaagtagtttttttgcttataataatgaccggagggagtaa 38294851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 14144388 - 14144329
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | |||||||||||||||||||||| ||| ||||||||||||||||||||    
T  14144388 acatacatcatttattcaataaacctaaaaagtagatttatgcttataatagtgaccgga 14144329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 42910773 - 42910707
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||| ||||| | ||||||||| ||||||||||||||||||  |||||||||||||||||| |||||    
T  42910773 acatgcatcatttattcaataatcctaaaaagtagttttttatttataatagtgaccggatagagta 42910707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 25792925 - 25792989
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggag 86  Q
    |||||||||| | | | ||| |||||||||||||  |||||||||||||||||||||||| ||||    
T  25792925 acatacatcatttaatgaatgaacctaaaaagtaaatttttgcttataatagtgaccggagggag 25792989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 12645440 - 12645499
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagtaacttgt 94  Q
    ||||||| ||| ||||||||| |||||||||||||   ||||||||||||||||| ||||    
T  12645440 attcaatgaacttaaaaagtatttttttgcttatatatgtgaccggatggagtaatttgt 12645499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 13356216 - 13356275
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | ||| ||| ||| |||||||||| ||||||||||||||| ||||||||    
T  13356216 acatacatcatttattgaatgaacttaaaaagtagatttttgcttataataatgaccgga 13356275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 14153405 - 14153363
Alignment:
Q  47 taaaaagtagttttttgcttataatagtgaccggatggagtaa 89  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||    
T  14153405 taaaaagtagatttttgcttataatagtgaccagatggtgtaa 14153363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 14751200 - 14751270
Alignment:
Q  18 ggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||| ||||||||   |||||||  ||||||||||| |||||||||||||||  ||||||||| ||||||    
T  14751200 ggttagatacatcaactattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggagggagta 14751270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 18033451 - 18033493
Alignment:
Q  39 aataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||| |||||| |||| ||||||||||||||||||||||||    
T  18033451 aataaatctaaaatgtagatttttgcttataatagtgaccgga 18033493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 41180313 - 41180351
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  41180313 aacctaaaatgtagttttttgcttatattagtgaccgga 41180351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 34445301 - 34445256
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||||| ||||||||||||||| ||||||| || ||||||    
T  34445301 aacctaaaaagttgttttttgcttataaaagtgaccagagggagta 34445256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 71341 - 71261
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||||| ||| | | | |||||||| | ||| ||| || ||||||  ||| ||||||||||||||||||||||||    
T  71341 atgtggtctataataaagatcatatacatcattaattgaatgaatctaaaatatagatttttgcttataatagtgaccgga 71261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 9707139 - 9707175
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccg 79  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  9707139 aacctaaatagtagatttttgcttataatagtgaccg 9707175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 25694215 - 25694259
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatggagt 87  Q
    |||||| ||||| | |||||||||||||||||||||||| |||||    
T  25694215 aacctagaaagttgatttttgcttataatagtgaccggagggagt 25694259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 748711 - 748794
Alignment:
Q  5 ggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||||||||||| |||||| ||||    
T  748711 ggtctatattaatggttacatacatcactcattcaatgaatctaaaaaattgttttttgcttataatagtgatcggatgaagta 748794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39617390 - 39617315
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtga 76  Q
    |||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  39617390 atgtggtctatattaatgatcacatacatcactcattcaataaatctaaaaagtagttttttacttataatagtga 39617315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 15057739 - 15057659
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||||||||||||   |||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  15057739 atgtggtctatattaatgaccacatacatcactcattcaatgaatctaaaaagtagttttttgcttataatagtgatcgga 15057659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 52923402 - 52923458
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgacc 78  Q
    |||||||||| | ||| ||| |||||||||||||| |||||||||||||||||||||    
T  52923402 acatacatcatttattgaatgaacctaaaaagtagatttttgcttataatagtgacc 52923458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 14214608 - 14214667
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | ||| ||| |||||||||||||  ||||||||||||||||||||||||    
T  14214608 acatacatcatttattgaatgaacctaaaaagtaagtttttgcttataatagtgaccgga 14214667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 6283614 - 6283676
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatgg 84  Q
    |||||||||| | | | ||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  6283614 acatacatcattaaatgaatgaacctaaaatgtagttttttgcttatattagtgaccggatgg 6283676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 42074224 - 42074278
Alignment:
Q  34 cattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| |||||||||| |||||||||||||||||  ||||||||| ||||||    
T  42074224 cattcaatgaacctaaaaaatagttttttgcttataaatgtgaccggaaggagta 42074278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 5091762 - 5091815
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||| ||||||||| ||||||||||| |||||||||||||| || ||||||    
T  5091762 attcaatgaacctaaaaggtagttttttgtttataatagtgacctgaaggagta 5091815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 38758400 - 38758445
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||||  ||||||||||||||||||||||||| ||||||    
T  38758400 aacctaaaaagtgtttttttgcttataatagtgaccggagggagta 38758445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 46829968 - 46830013
Alignment:
Q  39 aataaacctaaaaagtagttttttgcttataatagtgaccggatgg 84  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||    
T  46829968 aataaatctaaaatgtagttttttgctaataatagtgaccggatgg 46830013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 50308672 - 50308623
Alignment:
Q  39 aataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||| ||||||||| | ||||||||||||||||||||| |||||||||    
T  50308672 aataaatctaaaaagttgatttttgcttataatagtgaccagatggagta 50308623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 19175667 - 19175722
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgac 77  Q
    |||||||||| | ||| ||| || ||||||||||| ||||||||||||||||||||    
T  19175667 acatacatcatttattgaatgaatctaaaaagtagatttttgcttataatagtgac 19175722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 24115795 - 24115756
Alignment:
Q  39 aataaacctaaaaagtagttttttgcttataatagtgacc 78  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  24115795 aataaacctaaaatgtagttttttgcttatattagtgacc 24115756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 36040207 - 36040148
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | | | ||| ||||||||| ||||||||||||||||| |||||||||||    
T  36040207 acatacatcattaaatgaatgaacctaaaatgtagttttttgcttatattagtgaccgga 36040148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 5246203 - 5246153
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataata 72  Q
    ||||||||||| |||||||||||  ||||||||| | ||||||||||||||    
T  5246203 acatacatcacccattcaataaatttaaaaagtaatattttgcttataata 5246153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 6283575 - 6283537
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  6283575 aacctaaaatgtagttttttgcttatattagtgaccgga 6283537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 18569764 - 18569838
Alignment:
Q  7 tctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||||||||  ||||||||| || |||||| || |||||||||| ||||||  |||||||| ||| ||||    
T  18569764 tctatattaatggtctcatacatcagtcgttcaatgaatctaaaaagtaattttttaattataataatgatcgga 18569838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 24419625 - 24419679
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagtaa 89  Q
    |||||||  ||||||||||| |||||||||||||||  ||||||||| |||||||    
T  24419625 attcaatgtacctaaaaagttgttttttgcttataaatgtgaccggaaggagtaa 24419679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 28725566 - 28725604
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  28725566 aacctaaaatgtagttttttgcttatattagtgaccgga 28725604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 36040246 - 36040284
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  36040246 aacctaaaatgtagttttttgcttatattagtgaccgga 36040284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 28725529 - 28725468
Alignment:
Q  20 ttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||||| | | | ||| |||||||||  |||||||||||||||| |||||||||||    
T  28725529 ttacatacatcattaaatgaatgaacctaaaatatagttttttgcttatattagtgaccgga 28725468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 39931134 - 39931187
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||| ||||||||||||||  |||| ||||||||||||| ||||| |||||    
T  39931134 attcaatgaacctaaaaagtagaattttacttataatagtgatcggatagagta 39931187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 2122651 - 2122572
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||||||| | ||||||||||| || | | | ||| || ||||||  | ||||||||||||||||||||||||||    
T  2122651 atgtggtctatattta-ggttacatacaacatttaatgaatgaaactaaaatatggttttttgcttataatagtgaccgga 2122572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 4604930 - 4604974
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccg 79  Q
    ||||||||||||||||||||  ||||||||||||||  |||||||    
T  4604930 attcaataaacctaaaaagtgattttttgcttataaatgtgaccg 4604974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 17468179 - 17468243
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | ||||||| || ||||||||| || |||||||| ||||||||||| || ||||||    
T  17468179 atacatcagtgattcaatgaatctaaaaagtggtattttgcttttaatagtgaccagagggagta 17468243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 38173511 - 38173563
Alignment:
Q  36 ttcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||| |||||||||| || ||||||||||||||  ||||| ||||||||||    
T  38173511 ttcaatgaacctaaaaaatacttttttgcttataaatgtgactggatggagta 38173563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 38834670 - 38834606
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | ||| ||| || ||||||| ||  |||||||||||||||||||||||| ||||||    
T  38834670 atacatcatttatttaatgaatctaaaaaataaatttttgcttataatagtgaccggagggagta 38834606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 12736434 - 12736356
Alignment:
Q  4 tggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggat 82  Q
    ||||||| ||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  12736434 tggtctacattaatgatcacatacatcaatcattcaatgaacctaaaaagtagttttttgcttataatagtaaccggat 12736356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 24052909 - 24052968
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatg 83  Q
    |||||||| | ||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  24052909 atacatcatttattcaatgaacctaaaaagtagatttttgtttataatagtgaccggatg 24052968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 7410644 - 7410706
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatgg 84  Q
    |||||||||| | ||| ||||||||||||||| || | |||||||||||||||||||||||||    
T  7410644 acatacatcatttatttaataaacctaaaaagcagatatttgcttataatagtgaccggatgg 7410706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 15037812 - 15037752
Alignment:
Q  21 tacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||||| | ||| ||| |||||||||||||| |||||| |||||||| ||||||||    
T  15037812 tacatacatcatttattgaatgaacctaaaaagtagatttttgtttataatactgaccgga 15037752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 24052907 - 24052823
Alignment:
Q  4 tggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||| ||||||||| | || ||||||||||  |||||| ||||||||||  |||||||||||||||||  |||| ||| ||||||    
T  24052907 tggtttatattaatagatatatacatcactttttcaatgaacctaaaaaaaagttttttgcttataatgatgacaggagggagta 24052823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 33743511 - 33743567
Alignment:
Q  7 tctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttg 63  Q
    ||||||||||||||| |||||||||||||||  ||||| ||||||| | ||||||||    
T  33743511 tctatattaatggttgcatacatcactcattttataaatctaaaaatttgttttttg 33743567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 28882743 - 28882802
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||| |||| | ||| ||||||||||||| || | ||||||||||||||||||||||||    
T  28882743 acatatatcatttattgaataaacctaaaaggttgatttttgcttataatagtgaccgga 28882802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 31505117 - 31505176
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | | | ||| ||||||||| ||||||||||||||||| |||||||||||    
T  31505117 acatacatcattaaatgaatgaacctaaaatgtagttttttgcttatattagtgaccgga 31505176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 6197929 - 6197971
Alignment:
Q  46 ctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||   ||||||||||||||||||||||||||||||    
T  6197929 ctaaaaagtaaagttttgcttataatagtgaccggatggagta 6197971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 30857320 - 30857374
Alignment:
Q  34 cattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||| |||||||||| ||||||||||||||  ||||| ||| ||||||    
T  30857320 cattcaataaatctaaaaagtaattttttgcttataaatgtgacaggagggagta 30857374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 31505078 - 31505040
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  31505078 aacctaaaatgtagttttttgcttatattagtgaccgga 31505040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 41387873 - 41387903
Alignment:
Q  54 tagttttttgcttataatagtgaccggatgg 84  Q
    |||||||||||||||||||||||||||||||    
T  41387873 tagttttttgcttataatagtgaccggatgg 41387903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 13496475 - 13496434
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatgg 84  Q
    |||||| || ||||||||||||||||| ||||||||||||||    
T  13496475 aacctagaatgtagttttttgcttatattagtgaccggatgg 13496434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 13841884 - 13841843
Alignment:
Q  47 taaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||  |||||||||||||||||||||| ||||||||    
T  13841884 taaaaagtaaatttttgcttataatagtgaccgaatggagta 13841843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 31271613 - 31271670
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| ||| ||||||  | |||||| | ||||||||||||||||||||||||    
T  31271613 atacatcacttattgaataaatttgaaaagttgatttttgcttataatagtgaccgga 31271670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 10117051 - 10117111
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatgg 84  Q
    |||||||| | ||| ||| || |||||| |||  |||||||||||||||||||||||||||    
T  10117051 atacatcattaattgaatgaatctaaaatgtaaatttttgcttataatagtgaccggatgg 10117111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 10934665 - 10934605
Alignment:
Q  21 tacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||||| | ||| ||| ||  |||||  ||||||||||||||||||||||||||||    
T  10934665 tacatacatcattaattaaatgaatgtaaaatatagttttttgcttataatagtgaccgga 10934605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 27988138 - 27988074
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||| ||| ||||||| ||| |||||||| |||||||||||||||  |||||| ||| |||||    
T  27988138 atacattacttattcaatgaacttaaaaagttgttttttgcttataaatgtgaccagatagagta 27988074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 28045440 - 28045376
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||| ||| ||||||| ||| |||||||| |||||||||||||||  |||||| ||| |||||    
T  28045440 atacattacttattcaatgaacttaaaaagttgttttttgcttataaatgtgaccagatagagta 28045376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 21208637 - 21208710
Alignment:
Q  6 gtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccg 79  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||||| || |||||||||||||||||||||||    
T  21208637 gtctatattaatggttatatacatcacttattcaatgaacctaaaaaataattttttgcttataatagtgaccg 21208710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 31089968 - 31089895
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtag-ttttttgcttataatag 73  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||||||    
T  31089968 atgtggtctatattaatggtcacatacatcactcattcaatgaacctaaaaaatagtttttttgcttataatag 31089895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 49229226 - 49229301
Alignment:
Q  3 gtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgacc 78  Q
    ||||| |||||||||| ||||||| |||| |||||||||||||||||||| |  |||||| |||||| ||||||||    
T  49229226 gtggtatatattaatgtttacatatatcattcattcaataaacctaaaaaattattttttacttatagtagtgacc 49229301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29006917 - 29006834
Alignment:
Q  1 atgtggtctatattaatggtt-acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatgg 84  Q
    ||||||||||| ||||||| | |||||||||| | ||| ||| || ||||||| ||| |||||||||||||||||||||||||||    
T  29006917 atgtggtctat-ttaatggatcacatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgaccggatgg 29006834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 26752873 - 26752807
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttg-cttataatagtgaccggatggagtaa 89  Q
    |||||||| |||||||||| || ||||||||| ||||||  |||||||||||||||||||| |||||    
T  26752873 atacatcagtcattcaatagacttaaaaagtaattttttttcttataatagtgaccggatgaagtaa 26752807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 22235341 - 22235405
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | ||||||| || |||||| ||  ||||||||||||||||||||||||| ||||||    
T  22235341 atacatcagttattcaatgaatctaaaatgtgattttttgcttataatagtgaccggagggagta 22235405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 35009100 - 35009164
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | ||| ||||||| | |||| || ||||||| ||||||||||||||||||||||||    
T  35009100 atacatcaattattgaataaacttcaaaaataattttttgtttataatagtgaccggatggagta 35009164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 54164892 - 54164951
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | ||| ||| || ||||||| ||| ||||||||||||||||||||||||    
T  54164892 acatacatcatttattgaatgaatctaaaaaatagatttttgcttataatagtgaccgga 54164951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 31089965 - 31090022
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagt--tttttgcttataatagtgac 77  Q
    |||||||||| | ||||||| || ||||||||||||  ||||||||||||||||||||    
T  31089965 acatacatcatttattcaatgaatctaaaaagtagttctttttgcttataatagtgac 31090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 7277508 - 7277561
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||| |||||||| |||||| ||||||||  ||||| ||||||||||    
T  7277508 attcaataaacttaaaaagtcgtttttcgcttataaatgtgactggatggagta 7277561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 34763118 - 34763061
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccg 79  Q
    |||| ||| ||||||||||| ||||||| |||| ||||||||||| ||| ||||||||    
T  34763118 acatccattactcattcaatgaacctaagaagtggttttttgcttgtaagagtgaccg 34763061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 10065105 - 10065061
Alignment:
Q  44 acctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||| |||||||||||||||  ||||||||| ||||||    
T  10065105 acctaaaaagttgttttttgcttataaatgtgaccggagggagta 10065061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 21790184 - 21790243
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagtttt-ttgcttataatagtgaccgga 81  Q
    |||||||||| | |||| ||||||||||||| ||||||| ||||||||||||||| |||||    
T  21790184 acatacatcatttattcgataaacctaaaaa-tagtttttttgcttataatagtgtccgga 21790243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 24851469 - 24851548
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||| ||||||||| | ||||||||||| || | | | ||| |||||||||  | ||||||||||||||||||||||||||    
T  24851469 atgttgtctatattta-ggttacatacaacatttaatgaatgaacctaaaatatggttttttgcttataatagtgaccgga 24851548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 44587701 - 44587778
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgacc 78  Q
    |||||||||||||| |||   |||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  44587701 atgtggtctatattgatgaccacatacatcactcattcaatgaatctaaaaagtagttttttgcttataatagtgacc 44587778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 23143567 - 23143631
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | ||| |||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  23143567 atacatcatttattgaataaacctaaaaagttgatttttgcttataatagtgaccggagggagta 23143631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 23555357 - 23555421
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | ||| |||||||||||||||| | |||||||||||||||||||||||| ||||||    
T  23555357 atacatcatttattgaataaacctaaaaagttgatttttgcttataatagtgaccggagggagta 23555421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 40363277 - 40363226
Alignment:
Q  25 tacatcactcattcaataaacctaaaaagtagttttttgcttataatagtga 76  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  40363277 tacatcatttattcaatgaacctaaaaagtagttttttgcttataatagtga 40363226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 44587704 - 44587638
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||| | ||||||| |||||||||| |||| |||||||||||||| |||||||| ||||||    
T  44587704 acatacatcatttattcaatgaacctaaaaaatagtattttgcttataataatgaccggagggagta 44587638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 25625910 - 25625986
Alignment:
Q  5 ggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||||||||| ||||||||  ||| |||||||||| ||||||  | ||| |||| |||||||||||||||||    
T  25625910 ggtctatattaatggctacatacacaacttattcaataaatctaaaagattgttgtttgtttataatagtgaccgga 25625986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 472504 - 472557
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||| |||||||||| | || ||||||||||||| ||||||||||||||||    
T  472504 attcaattaacctaaaaaattgtgttttgcttataattgtgaccggatggagta 472557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 2577736 - 2577676
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagtttttt-gcttataatagtgaccgga 81  Q
    |||||||||| || |||||| |||||||||| ||||||||| | |||||||||||||||||    
T  2577736 acatacatcattcgttcaatgaacctaaaaaatagtttttttgtttataatagtgaccgga 2577676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2577733 - 2577784
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaa 52  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| ||| ||||||    
T  2577733 atgtggtatatattaatggctacatacataactcattcaatgaacttaaaaa 2577784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 13333527 - 13333585
Alignment:
Q  23 catacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||| | | ||||| || |||||| |||| ||||||||||||||||||||||||    
T  13333527 catacatcatttaatcaatgaatctaaaatgtagatttttgcttataatagtgaccgga 13333585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 15119873 - 15119915
Alignment:
Q  39 aataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||| |||||| |||| ||||||||||||||||||||||||    
T  15119873 aataaatctaaaatgtagatttttgcttataatagtgaccgga 15119915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 30429109 - 30429063
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatggagtaa 89  Q
    |||||||||||| |||||||||||||||  ||||||||| |||||||    
T  30429109 aacctaaaaagttgttttttgcttataaatgtgaccggagggagtaa 30429063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 20218594 - 20218541
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||| || |||||||||  ||||||||||||||||||||| ||| ||||||    
T  20218594 attcaatgaaactaaaaagtgtttttttgcttataatagtgactggagggagta 20218541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 23143526 - 23143481
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||||| | |||||||||||||||||||||| | ||||||    
T  23143526 aacctaaaaagttgatttttgcttataatagtgaccgaagggagta 23143481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 23555316 - 23555271
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||||| | |||||||||||||||||||||| | ||||||    
T  23555316 aacctaaaaagttgatttttgcttataatagtgaccgaagggagta 23555271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Original strand, 20218627 - 20218691
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | ||||||| || |||||||||  ||| ||||||||||||||||| ||| ||||||    
T  20218627 atacatcaattattcaatgaatctaaaaagtgatttcttgcttataatagtgacaggagggagta 20218691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 23738398 - 23738461
Alignment:
Q  23 catacatcactcattcaataaacctaaaaagt--agttttttgcttataatagtgaccggatgg 84  Q
    ||||||||| | ||| ||||||||||||| ||  | ||||||||||||||||||||| ||||||    
T  23738398 catacatcatttattgaataaacctaaaatgttaaattttttgcttataatagtgactggatgg 23738461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 27331837 - 27331897
Alignment:
Q  21 tacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||||| | ||| ||| || |||||| || | ||||||||||||||||||||||||    
T  27331837 tacatacatcattaattgaatgaatctaaaatgttgatttttgcttataatagtgaccgga 27331897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 32316476 - 32316555
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||||||| | ||||||||||| || | | | | | |||||||||  | ||||||||||||||||||||||||||    
T  32316476 atgtggtctatattta-ggttacatacaacatttaatgactgaacctaaaatatggttttttgcttataatagtgaccgga 32316555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 39682667 - 39682754
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||||||||||||| ||||||| ||||| |||||| |||||||||| |||||||||  |||||||| |||||||| ||||||    
T  39682667 atgtggtctatattaatggtcacatacaacactctttcaatgaacctaaaaaatagttttttatttataataatgaccggagggagta 39682754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 39964357 - 39964290
Alignment:
Q  21 tacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||| | | ||||||| || ||||||||||||||||||||||||||| |||||||| ||||||    
T  39964357 tacatacataatttattcaatgaatctaaaaagtagttttttgcttataataatgaccggagggagta 39964290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 39964353 - 39964435
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagt--tttttgcttataatagtgaccgga 81  Q
    |||| ||||||||||||||| ||||||||||||| |||||| ||| ||||||| | |  ||||| ||||||||||||||||||    
T  39964353 atgtagtctatattaatggtcacatacatcactcgttcaatgaacataaaaagcactagtttttacttataatagtgaccgga 39964435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 36447922 - 36447866
Alignment:
Q  28 atcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatgg 84  Q
    |||||| ||||||| |||||||||||  |||||||||||||||||||||| ||||||    
T  36447922 atcacttattcaattaacctaaaaagcggttttttgcttataatagtgactggatgg 36447866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 27161503 - 27161591
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttt---tgcttataatagtgaccggatggag 86  Q
    ||||| || |||||||||   |||| ||||||||||||||| |||||||||||||||||||   | ||||||||||||| |||| ||||    
T  27161503 atgtgatccatattaatgaccacattcatcactcattcaattaacctaaaaagtagtttttttcttcttataatagtgatcggagggag 27161591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 105453 - 105367
Alignment:
Q  1 atgtggtctatattaatggtt-acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||||||||  |||||| |||||||||| | ||||||| || |||||||||   |||||| ||| ||||||||||||||||||||    
T  105453 atgtggtctatat--atggttcacatacatcatttattcaatgaatctaaaaagtgaatttttgtttacaatagtgaccggatggagta 105367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 26331309 - 26331362
Alignment:
Q  36 ttcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagtaa 89  Q
    |||||| |||||||||||| |||||||||||||||  ||||||||| |||||||    
T  26331309 ttcaatgaacctaaaaagttgttttttgcttataaatgtgaccggagggagtaa 26331362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 12708739 - 12708818
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||||||| | ||||||||||| || | | | ||| |||||||||  | ||||||||||||||||||||||||||    
T  12708739 atgtggtctatattta-ggttacatacaacatttaatgaatgaacctaaaatatggttttttgcttataatagtgaccgga 12708818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 8439319 - 8439260
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | | | ||| ||||||||| ||||||||||||||||| |||||||||||    
T  8439319 acatacatcattaaatgaatgaacctaaaatgtagttttttgcttatattagtgaccgga 8439260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 25881215 - 25881274
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||| | | | ||| ||||||||| ||||||||||||||||| |||||||||||    
T  25881215 acatacatcattaaatgaatgaacctaaaatgtagttttttgcttatattagtgaccgga 25881274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 34036607 - 34036548
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||||| ||||||| ||| ||||||||   |||||||||| |||||||||||||    
T  34036607 acatacatcacttattcaatgaacttaaaaagtgcatttttgcttaaaatagtgaccgga 34036548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 77
Target Start/End: Complemental strand, 39682670 - 39682615
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgac 77  Q
    |||||||||| | ||||||| |||||||||| || |||||| ||||||||||||||    
T  39682670 acatacatcatttattcaatgaacctaaaaaataattttttacttataatagtgac 39682615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 25881176 - 25881138
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  25881176 aacctaaaatgtagttttttgcttatattagtgaccgga 25881138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 36270081 - 36270127
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||| ||| |||||| | ||||||||||||||||||||||||||    
T  36270081 attcaatgaacataaaaaatggttttttgcttataatagtgaccgga 36270127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 50626781 - 50626827
Alignment:
Q  35 attcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    ||||||| |||||| ||||| |||| |||||||||||||||||||||    
T  50626781 attcaatgaacctataaagtggtttgttgcttataatagtgaccgga 50626827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 27786496 - 27786451
Alignment:
Q  43 aacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    ||||||||||||||||||||||||||||  ||||||| | ||||||    
T  27786496 aacctaaaaagtagttttttgcttataaatgtgaccgaagggagta 27786451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 50603592 - 50603649
Alignment:
Q  22 acatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccg 79  Q
    |||||||||| | ||| ||| ||| |||||| ||| ||||||||||||||||||||||    
T  50603592 acatacatcatttattgaatgaacttaaaaaatagatttttgcttataatagtgaccg 50603649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 51880547 - 51880596
Alignment:
Q  21 tacatacatcactcattcaataaacctaaaaagtagttttttgcttataa 70  Q
    |||||||||||||| |||||||||| || ||||  |||||||||||||||    
T  51880547 tacatacatcactctttcaataaacttagaaagacgttttttgcttataa 51880596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 8036595 - 8036531
Alignment:
Q  24 atacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatggagta 88  Q
    |||||||| | ||||||| |||||||||| ||  | |||||||||||||||||||| | ||||||    
T  8036595 atacatcagttattcaatgaacctaaaaaataaatatttgcttataatagtgaccgaagggagta 8036531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 8504887 - 8504835
Alignment:
Q  46 ctaaaaagtagttttttgcttataatagtgaccggatggagtaacttgtaaga 98  Q
    |||||| |||| |||||||||||||||||||||||| || |||| || |||||    
T  8504887 ctaaaatgtagatttttgcttataatagtgaccggagggtgtaaattttaaga 8504835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 4455 - 4376
Alignment:
Q  1 atgtggtctatattaatggttacatacatcactcattcaataaacctaaaaagtagttttttgcttataatagtgaccgga 81  Q
    |||||||||||||| | ||||||||||| || | | | ||| |||||||||  | ||||||||||||||||||||||||||    
T  4455 atgtggtctatattta-ggttacatacaacatttaatgaatgaacctaaaatatggttttttgcttataatagtgaccgga 4376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 89
Target Start/End: Original strand, 135879 - 135922
Alignment:
Q  46 ctaaaaagtagttttttgcttataatagtgaccggatggagtaa 89  Q
    |||||||||| || ||||||||||||||| ||||||||||||||    
T  135879 ctaaaaagtaattgtttgcttataatagtaaccggatggagtaa 135922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 36476 - 36425
Alignment:
Q  33 tcattcaataaacctaaaaagtagttttttgcttataatagtgaccggatgga 85  Q
    |||| |||| |||||||||||| | |||||||||||||| |||||||||||||    
T  36476 tcatccaatgaacctaaaaagtggatttttgcttataat-gtgaccggatgga 36425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University