View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11007_low_14 (Length: 274)

Name: NF11007_low_14
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11007_low_14
NF11007_low_14
[»] chr8 (9 HSPs)
chr8 (1-260)||(1782095-1782354)
chr8 (1-136)||(18608439-18608574)
chr8 (87-143)||(14318416-14318472)
chr8 (87-143)||(18493978-18494034)
chr8 (87-143)||(26981676-26981732)
chr8 (87-143)||(26986790-26986846)
chr8 (87-143)||(34108578-34108634)
chr8 (89-143)||(14314712-14314766)
chr8 (1-86)||(43956689-43956774)
[»] chr4 (13 HSPs)
chr4 (1-143)||(47071671-47071814)
chr4 (4-143)||(34601825-34601965)
chr4 (1-145)||(14643524-14643669)
chr4 (1-143)||(22118987-22119130)
chr4 (36-143)||(30019638-30019744)
chr4 (87-143)||(35096375-35096431)
chr4 (1-80)||(54859022-54859101)
chr4 (42-143)||(3409329-3409431)
chr4 (87-143)||(35091262-35091318)
chr4 (87-136)||(3424121-3424170)
chr4 (52-136)||(18716871-18716955)
chr4 (222-259)||(26279592-26279628)
chr4 (87-143)||(32429034-32429090)
[»] chr6 (5 HSPs)
chr6 (1-141)||(12909534-12909675)
chr6 (1-141)||(12934641-12934782)
chr6 (1-145)||(21936406-21936551)
chr6 (87-143)||(21276120-21276176)
chr6 (87-135)||(11182996-11183044)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-145)||(173623-173768)
[»] chr5 (7 HSPs)
chr5 (3-135)||(35368631-35368764)
chr5 (32-143)||(43540564-43540676)
chr5 (42-143)||(2024365-2024467)
chr5 (16-86)||(13556143-13556213)
chr5 (87-143)||(9872225-9872281)
chr5 (87-143)||(9877340-9877396)
chr5 (88-143)||(39909306-39909361)
[»] chr2 (9 HSPs)
chr2 (1-143)||(42780453-42780596)
chr2 (87-143)||(30283251-30283307)
chr2 (87-143)||(14917183-14917239)
chr2 (87-143)||(17720000-17720056)
chr2 (87-143)||(39178946-39179002)
chr2 (1-40)||(20892235-20892274)
chr2 (1-82)||(716593-716674)
chr2 (37-129)||(20892112-20892205)
chr2 (87-144)||(45120734-45120791)
[»] scaffold0006 (1 HSPs)
scaffold0006 (16-135)||(144365-144485)
[»] chr1 (14 HSPs)
chr1 (16-135)||(13654604-13654724)
chr1 (1-136)||(19311093-19311229)
chr1 (36-141)||(35653036-35653142)
chr1 (1-129)||(10185969-10186098)
chr1 (4-129)||(1188094-1188220)
chr1 (32-145)||(1188277-1188391)
chr1 (89-143)||(16051534-16051588)
chr1 (1-126)||(44523889-44524014)
chr1 (52-142)||(17414304-17414395)
chr1 (3-134)||(10186312-10186444)
chr1 (87-143)||(28574644-28574700)
chr1 (87-143)||(28598656-28598712)
chr1 (87-143)||(3468415-3468471)
chr1 (87-143)||(43359149-43359205)
[»] chr7 (8 HSPs)
chr7 (8-136)||(37459710-37459839)
chr7 (70-143)||(2248853-2248927)
chr7 (87-143)||(12852023-12852079)
chr7 (87-143)||(12857136-12857192)
chr7 (87-143)||(26051368-26051424)
chr7 (87-143)||(26056481-26056537)
chr7 (87-143)||(26060727-26060783)
chr7 (87-143)||(26065840-26065896)
[»] chr3 (17 HSPs)
chr3 (1-143)||(29827742-29827885)
chr3 (87-143)||(4050155-4050211)
chr3 (87-143)||(4055289-4055345)
chr3 (87-143)||(5481289-5481345)
chr3 (87-143)||(6852753-6852809)
chr3 (87-143)||(6857856-6857912)
chr3 (87-143)||(8458659-8458715)
chr3 (87-143)||(8465097-8465153)
chr3 (87-143)||(10584659-10584715)
chr3 (87-143)||(10672739-10672795)
chr3 (87-143)||(10677852-10677908)
chr3 (87-143)||(33702400-33702456)
chr3 (87-141)||(20891496-20891550)
chr3 (87-136)||(10591103-10591152)
chr3 (87-135)||(1302053-1302101)
chr3 (87-143)||(31076201-31076257)
chr3 (87-143)||(31081308-31081364)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 1782095 - 1782354
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttgtgaagagttataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1782095 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttgtgaagagttataac 1782194  T
Q  101 tttttgttctaaaataattccattattttagaaatctccaacacattctccaaaactcagacacaatacatcaactacatgcttttactttcnnnnnnnn 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  1782195 tttttgttctaaaataattccattattttagaaatctccaacacattctccaaaactcagacacaatacatcaactacatgcttttactttctttttttt 1782294  T
Q  201 cctagtatgnnnnnnnntaaacattcgttagttagaaacatgaatgaattcgtatacaca 260  Q
    |||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  1782295 cctagtatgaaaaaaaataaacattcgttagttagaaacatgaatgaattcgtatacaca 1782354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 18608574 - 18608439
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataa 99  Q
    ||||||| || |||||||||| || |||   |||||||||| | |||||  ||||||||||||| | | ||||||||||||||||| | |||| | | ||    
T  18608574 tgaatcactgctatggttcatcaagcacccctttgccaaagatcccaatt-atatgaatgattcccatgaagagttacaactcttggttaagaatcacaa 18608476  T
Q  100 ctttttgttctaaaataattccattattttagaaatc 136  Q
    ||||| |||||||| | ||||||||||||| ||||||    
T  18608475 cttttagttctaaagtgattccattattttggaaatc 18608439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 14318472 - 14318416
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  14318472 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 14318416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 18494034 - 18493978
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  18494034 tgaagagttacaacttttggttctaaattgattccattattttggaaatcaccaaca 18493978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 26981732 - 26981676
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26981732 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26981676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 26986846 - 26986790
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26986846 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26986790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 34108578 - 34108634
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  34108578 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 34108634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 14314766 - 14314712
Alignment:
Q  89 aagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||| ||||||| |||||||| |||||||||||||||  ||||| ||||||    
T  14314766 aagagttacaacttttggttctaaagtaattccattattttgaaaatcaccaaca 14314712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43956774 - 43956689
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg 86  Q
    ||||||||||| |  ||||||||| |||  ||||||||||| |||||||  ||||||| ||||  | | |||||||||||||||||    
T  43956774 tgaatcaatgtaaatgttcattaagcacctatttgccaaagattccaatgtatatgaaagatttccatgaagagttacaactcttg 43956689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 47071671 - 47071814
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    |||||||||||||||||||||||| |||  |||||||||||||||||||  ||||||||||||  | | |||||||||||||||| ||||||||||| ||    
T  47071671 tgaatcaatgttatggttcattaagcacccatttgccaaaggttccaatgtatatgaatgattttcatgaagagttacaactcttggtgaagagttacaa 47071770  T
Q  100 ctttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    ||||| ||| |||| | ||||||||||||| |||||| ||||||    
T  47071771 cttttggttgtaaagtgattccattattttggaaatcaccaaca 47071814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 34601965 - 34601825
Alignment:
Q  4 atcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaact-cttgtgaagagttataactt 102  Q
    ||||||||||||||||||||| |||   |||||||||| ||| |||  ||||||||||||| | | ||||||||||||| || ||||| ||||| |||||    
T  34601965 atcaatgttatggttcattaagcacccctttgccaaagattcaaatgtatatgaatgattctcatgaagagttacaacttctcgtgaaaagttacaactt 34601866  T
Q  103 tttgttctaaaataattccattattttagaaatctccaaca 143  Q
    || |||||||||| |||||||||||||||||||| ||||||    
T  34601865 ttagttctaaaatgattccattattttagaaatcaccaaca 34601825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 14643669 - 14643524
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    ||||||||||||| |||||||||| |||   ||||||||||||||||||  ||||||||||||| | | || ||||||||||||| ||||||||||| ||    
T  14643669 tgaatcaatgttaaggttcattaagcacccttttgccaaaggttccaatgtatatgaatgattcccatgaatagttacaactcttggtgaagagttacaa 14643570  T
Q  100 ctttttgttctaaaataattccattattttagaaatctccaacaca 145  Q
    ||||| |||||||| | |||| ||||||||  ||||| ||||||||    
T  14643569 cttttggttctaaagtgattcaattattttgtaaatcaccaacaca 14643524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 22118987 - 22119130
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataa 99  Q
    |||||||||| || |||||||||| |||  |||||||||||||||||||  | ||||||||||  |   ||||||| ||||||||| |||||||||| ||    
T  22118987 tgaatcaatgctaaggttcattaagcacccatttgccaaaggttccaatgtaaatgaatgattttcaggaagagttgcaactcttgatgaagagttacaa 22119086  T
Q  100 ctttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    ||||| |||||||| | |||||||||||||  ||||| ||||||    
T  22119087 cttttggttctaaagtgattccattattttgaaaatcaccaaca 22119130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 30019744 - 30019638
Alignment:
Q  36 ccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataactttttgttctaaaataattccattattttagaaa 134  Q
    ||||||||||||||  ||||||| ||||| | | |||||||||||||||| ||||||||||| |||  ||  ||||||| | ||||||||||||||||||    
T  30019744 ccaaaggttccaatgtatatgaaagattcccatgaagagttacaactcttggtgaagagttacaac--ttgattctaaagtgattccattattttagaaa 30019647  T
Q  135 tctccaaca 143  Q
    || ||||||    
T  30019646 tcaccaaca 30019638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 35096375 - 35096431
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| |||||||||||||||| | ||||||||||||| |||||| ||||||    
T  35096375 tgaagagttacaactttttgttctaaagtgattccattattttggaaatcaccaaca 35096431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 54859101 - 54859022
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaa 80  Q
    ||||||||||||||| |||||||| |||   ||||||||||||||||||  |||||||||||||   | |||||||||||    
T  54859101 tgaatcaatgttatgtttcattaagcacccttttgccaaaggttccaatgtatatgaatgattccaatgaagagttacaa 54859022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 143
Target Start/End: Complemental strand, 3409431 - 3409329
Alignment:
Q  42 gttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctcca 140  Q
    ||||||||  ||||||||| ||| | | ||||||||||| ||||| | |||||| | ||||||| |||||||| | ||||||||||||| |||||| |||    
T  3409431 gttccaatgtatatgaatggttctcatgaagagttacaaatcttggtcaagagtaacaacttttagttctaaagtgattccattattttggaaatcacca 3409332  T
Q  141 aca 143  Q
    |||    
T  3409331 aca 3409329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 35091262 - 35091318
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  35091262 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 35091318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 3424170 - 3424121
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatc 136  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| ||||||    
T  3424170 tgaagagttacaacttttggttctaaagtgattccattattttggaaatc 3424121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 18716871 - 18716955
Alignment:
Q  52 atatgaatgattcacgtaaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatc 136  Q
    ||||||||| ||| | | ||||||||||||||||| |||||||||| |  |||| |||||||| | ||||||||||||| ||||||    
T  18716871 atatgaatggttcccatgaagagttacaactcttggtgaagagttacag-ttttggttctaaactgattccattattttggaaatc 18716955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 26279592 - 26279628
Alignment:
Q  222 cattcgttagttagaaacatgaatgaattcgtatacac 259  Q
    |||||||||||||||| |||||||||||||||||||||    
T  26279592 cattcgttagttagaa-catgaatgaattcgtatacac 26279628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 32429090 - 32429034
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| |||| || |||||||| | ||||||||||||| |||||| ||||||    
T  32429090 tgaagagttacaactcttggttctaaagtgattccattattttggaaatcaccaaca 32429034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 12909534 - 12909675
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    |||||||||| || |||||||||| |||   ||||||||||||||||||  ||||||||||||| | | || ||||||||||||| ||||||||||| ||    
T  12909534 tgaatcaatgctaaggttcattaaacacctttttgccaaaggttccaatgtatatgaatgattctcatgaaaagttacaactcttggtgaagagttacaa 12909633  T
Q  100 ctttttgttctaaaataattccattattttagaaatctccaa 141  Q
    ||||| |||||||| | |||||||||||||||||||| ||||    
T  12909634 cttttggttctaaagtgattccattattttagaaatcaccaa 12909675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 12934641 - 12934782
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    |||||||||| || |||||||||| |||   ||||||||||||||||||  ||||||||||||| | | || ||||||||||||| ||||||||||| ||    
T  12934641 tgaatcaatgctaaggttcattaaacacctttttgccaaaggttccaatgtatatgaatgattctcatgaaaagttacaactcttggtgaagagttacaa 12934740  T
Q  100 ctttttgttctaaaataattccattattttagaaatctccaa 141  Q
    ||||| |||||| | | ||||||||||||| |||||| ||||    
T  12934741 cttttggttctagagtgattccattattttggaaatcaccaa 12934782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 21936551 - 21936406
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataa 99  Q
    ||||||||||  | |||||||||| |||  ||||||||||||||| |||  |||| || ||||  | ||||||||||||||||||| |||||||||| ||    
T  21936551 tgaatcaatgcaaaggttcattaagcacccatttgccaaaggttcaaatgtatataaaagatttccataaagagttacaactcttggtgaagagttacaa 21936452  T
Q  100 ctttttgttctaaaataattccattattttagaaatctccaacaca 145  Q
    ||||| |||||||| | ||||||||||||| |||||| ||||||||    
T  21936451 cttttggttctaaagtgattccattattttggaaatcaccaacaca 21936406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 21276120 - 21276176
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  21276120 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 21276176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 11183044 - 11182996
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaat 135  Q
    |||||||||| ||| ||| |||||||| | |||||||||||||||||||    
T  11183044 tgaagagttacaacatttggttctaaattgattccattattttagaaat 11182996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 173623 - 173768
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    ||||||||||||| |||||||||| |||   ||||||||||||||||||  ||||||||||||| | | || ||||||||||||| ||||||||||| ||    
T  173623 tgaatcaatgttaaggttcattaagcacccttttgccaaaggttccaatgtatatgaatgattcccatgaatagttacaactcttggtgaagagttacaa 173722  T
Q  100 ctttttgttctaaaataattccattattttagaaatctccaacaca 145  Q
    ||||| |||||||| | |||| ||||||||  ||||| ||||||||    
T  173723 cttttggttctaaagtgattcaattattttgtaaatcaccaacaca 173768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 135
Target Start/End: Complemental strand, 35368764 - 35368631
Alignment:
Q  3 aatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataact 101  Q
    |||||||| || |||||||||| |||| |||||||||||||||||||  ||||||| ||||| | ||||||||||||||||||| |||| ||||| ||||    
T  35368764 aatcaatgctaaggttcattaagcactcatttgccaaaggttccaatgtatatgaaagattctcataaagagttacaactcttgatgaaaagttacaact 35368665  T
Q  102 ttttgttctaaaataattccattattttagaaat 135  Q
    |||  ||||||| | |||||||| ||||||||||    
T  35368664 tttgattctaaagtgattccattcttttagaaat 35368631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 43540676 - 43540564
Alignment:
Q  32 tttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattatttta 130  Q
    ||||||||||||||||||  |||||||| |||  | | ||||||||||||||||| |||||||||| ||||||| |||||||| | |||| ||||||||     
T  43540676 tttgccaaaggttccaatgtatatgaataattaccatgaagagttacaactcttggtgaagagttacaacttttggttctaaattgattcaattattttg 43540577  T
Q  131 gaaatctccaaca 143  Q
    |||||| ||||||    
T  43540576 gaaatcaccaaca 43540564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 2024365 - 2024467
Alignment:
Q  42 gttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctcca 140  Q
    ||||||||  ||||||||| ||| ||| ||||||||||||||||| | |||| | | ||||||| |||||||| | ||||||||||||| |||||| |||    
T  2024365 gttccaatgtatatgaatggttcccgtgaagagttacaactcttggtcaagattaacaacttttggttctaaagtgattccattattttggaaatcacca 2024464  T
Q  141 aca 143  Q
    |||    
T  2024465 aca 2024467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 13556213 - 13556143
Alignment:
Q  16 gttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg 86  Q
    ||||||||| |||  |||||||||||||||||||  ||||||| ||||| | | |||||||||||||||||    
T  13556213 gttcattaagcacctatttgccaaaggttccaatgtatatgaaagattcccatgaagagttacaactcttg 13556143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 9872281 - 9872225
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  9872281 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 9872225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 9877396 - 9877340
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  9877396 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 9877340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 39909306 - 39909361
Alignment:
Q  88 gaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    ||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  39909306 gaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 39909361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 42780453 - 42780596
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    |||||||||||||||||||||||| |||  |||||| ||| ||||||||  ||||||| ||||| | | ||||||||||||| || || |||||| | ||    
T  42780453 tgaatcaatgttatggttcattaagcacctatttgctaaaagttccaatgtatatgaaagattctcatgaagagttacaacttttggtcaagagtaacaa 42780552  T
Q  100 ctttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    ||||| |||||||| | ||||||||||||| |||||| ||||||    
T  42780553 cttttggttctaaagtgattccattattttggaaatcaccaaca 42780596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 30283307 - 30283251
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||||| ||||||||||||| |||||| ||||||    
T  30283307 tgaagagttacaacttttggttctaaaatgattccattattttggaaatcaccaaca 30283251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 14917239 - 14917183
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  14917239 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 14917183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 17720056 - 17720000
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  17720056 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 17720000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 39178946 - 39179002
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  39178946 tgaagagttacaacttttagttctaaagtgattccattattttggaaatcaccaaca 39179002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 20892274 - 20892235
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaa 40  Q
    ||||||||||||||||||||||||||||| | ||||||||    
T  20892274 tgaatcaatgttatggttcattaatcactcacttgccaaa 20892235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 716593 - 716674
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaact 82  Q
    ||||||||||  | |||| ||||| |||  |||| || |||||||||||  ||||||| ||||||| |||||||||||||||    
T  716593 tgaatcaatgcaaaggtttattaaacacctatttacctaaggttccaatgtatatgaaagattcacataaagagttacaact 716674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 20892205 - 20892112
Alignment:
Q  37 caaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataactttttgttctaaaataattccattatttt 129  Q
    |||| ||||||||  ||||||||| ||| | | |||||||||||||||| ||||| || || ||||||| ||| |||| | |||||||||||||    
T  20892205 caaatgttccaatgtatatgaatggttctcatgaagagttacaactcttggtgaaaagatacaacttttggttttaaagtgattccattatttt 20892112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 45120734 - 45120791
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaacac 144  Q
    |||||||||| |||||||  ||||||| | ||||||||||||| |||||| |||||||    
T  45120734 tgaagagttacaacttttaattctaaagtgattccattattttggaaatcaccaacac 45120791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 144365 - 144485
Alignment:
Q  16 gttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataactttttgttctaaaa 114  Q
    ||||||||| |||  |||||||||||||||||||  ||||||| || || | | |||||||||||||||| ||||||||||| ||||||| ||||||||     
T  144365 gttcattaagcacctatttgccaaaggttccaatgtatatgaaagactctcatgaagagttacaactcttggtgaagagttacaacttttggttctaaag 144464  T
Q  115 taattccattattttagaaat 135  Q
    | ||||||||||||| |||||    
T  144465 tgattccattattttggaaat 144485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 135
Target Start/End: Original strand, 13654604 - 13654724
Alignment:
Q  16 gttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataactttttgttctaaaa 114  Q
    ||||||||| |||  |||||||||||||||||||  ||||||| || || | | |||||||||||||||| ||||||||||| ||||||| ||||||||     
T  13654604 gttcattaagcacctatttgccaaaggttccaatgtatatgaaagactctcatgaagagttacaactcttggtgaagagttacaacttttggttctaaag 13654703  T
Q  115 taattccattattttagaaat 135  Q
    | ||||||||||||| |||||    
T  13654704 tgattccattattttggaaat 13654724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 19311093 - 19311229
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    |||||||||| || |||||||||  |||   ||||||||||||||||||  ||||||| ||||| | | |||||||||||||||| ||||||||||| ||    
T  19311093 tgaatcaatgctaaggttcattatgcacccctttgccaaaggttccaatgtatatgaaagattcccatgaagagttacaactcttggtgaagagttacaa 19311192  T
Q  100 ctttttgttctaaaataattccattattttagaaatc 136  Q
    ||||| ||| |||| | ||||||||||||| ||||||    
T  19311193 cttttggttataaagtgattccattattttggaaatc 19311229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 35653142 - 35653036
Alignment:
Q  36 ccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaa 134  Q
    ||||||| ||||||| ||||||||||||| | | ||| ||||||||||||| |||||||||| ||||||| |||| ||| | ||||||||||||| ||||    
T  35653142 ccaaaggctccaatatatatgaatgattcccatgaagtgttacaactcttggtgaagagttacaacttttggttccaaagtgattccattattttggaaa 35653043  T
Q  135 tctccaa 141  Q
    || ||||    
T  35653042 tcaccaa 35653036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 10185969 - 10186098
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    |||||||| | || |||||||||| |||  |||||| ||||||| ||||  ||||||| ||||| | ||||||||||||| |||| ||||||||||| ||    
T  10185969 tgaatcaacgctaaggttcattaagcacccatttgctaaaggtttcaatgtatatgaaagattcccataaagagttacaattcttggtgaagagttacaa 10186068  T
Q  100 ctttttgttctaaaataattccattatttt 129  Q
    |||||  ||||||| | |||||||||||||    
T  10186069 cttttgattctaaagtgattccattatttt 10186098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 1188094 - 1188220
Alignment:
Q  4 atcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataactt 102  Q
    ||||||| || |||||||||||||    ||||||||| ||||||||  ||||||| ||||| | | || |||||||||||||| |||| ||||| |||||    
T  1188094 atcaatgctaaggttcattaatcatccttttgccaaatgttccaatgtatatgaaagattcccatgaatagttacaactcttggtgaaaagttacaactt 1188193  T
Q  103 tttgttctaaaataattccattatttt 129  Q
    || |||||||| | |||||||||||||    
T  1188194 ttggttctaaagtgattccattatttt 1188220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 1188277 - 1188391
Alignment:
Q  32 tttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattatttta 130  Q
    ||||||||| |||||||| |||| ||| |||||   | | ||||||||||||||| |||| ||||| || |||| |||||||| | |||||||||||||     
T  1188277 tttgccaaatgttccaattcatacgaaagattcctatgacgagttacaactcttggtgaaaagttacaatttttggttctaaagtgattccattattttg 1188376  T
Q  131 gaaatctccaacaca 145  Q
    |||||| ||||||||    
T  1188377 gaaatcaccaacaca 1188391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 16051534 - 16051588
Alignment:
Q  89 aagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||||||||| |||||||| | |||||||||||||||||||| ||||||    
T  16051534 aagagttataacttttggttctaaagtgattccattattttagaaatcaccaaca 16051588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 44524014 - 44523889
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    |||||||||||||||||||||||| |||   |||| ||||||||  |||  ||||||||||||| | | |||||||||||||||| | ||||| ||| ||    
T  44524014 tgaatcaatgttatggttcattaagcacccctttgacaaaggtttaaatgtatatgaatgattcccatgaagagttacaactcttagcgaagatttacaa 44523915  T
Q  100 ctttttgttctaaaataattccattat 126  Q
    ||||| |||| ||| | ||||||||||    
T  44523914 cttttggttc-aaagtgattccattat 44523889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 17414395 - 17414304
Alignment:
Q  52 atatgaatgattcacgtaaagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaac 142  Q
    |||||||||||||   | ||||||||||||| ||| |||||||||| || |||| |||||||| | ||||||||||||| |||||| |||||    
T  17414395 atatgaatgattctaatgaagagttacaacttttggtgaagagttacaagttttggttctaaagtgattccattattttggaaatcaccaac 17414304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 10186444 - 10186312
Alignment:
Q  3 aatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactcttg-tgaagagttataact 101  Q
    |||||||| || || ||||||| |||   ||||| ||| ||| ||||  ||||||| ||||| | | ||||||||||||||||| |||||||||| ||||    
T  10186444 aatcaatgataaggctcattaagcacccctttgctaaaagtttcaatgtatatgaaagattcccatgaagagttacaactcttggtgaagagttaaaact 10186345  T
Q  102 ttttgttctaaaataattccattattttagaaa 134  Q
    |||   |||||| | ||||||||||||| ||||    
T  10186344 tttgagtctaaagtgattccattattttggaaa 10186312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 28574644 - 28574700
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  28574644 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 28574700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 28598656 - 28598712
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  28598656 tgaagagttacaacttttggttctaaattgattccattattttggaaatcaccaaca 28598712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 3468415 - 3468471
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||| ||| |||||||  ||||||||| ||||||||||||| |||||| ||||||    
T  3468415 tgaagaattacaacttttgattctaaaatgattccattattttggaaatcaccaaca 3468471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 43359149 - 43359205
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| |||| || |||||||| | ||||||||||||| |||||| ||||||    
T  43359149 tgaagagttacaactcttggttctaaagtgattccattattttggaaatcaccaaca 43359205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 37459839 - 37459710
Alignment:
Q  8 atgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataactttttg 106  Q
    ||||||||||||||||| |||| |||||||||||||| ||||  ||||||||||||| | | ||||||| |  || || ||||||||||| |||||||      
T  37459839 atgttatggttcattaaacactcatttgccaaaggttacaatgtatatgaatgattcccatgaagagttcctgcttttggtgaagagttaaaacttttga 37459740  T
Q  107 ttctaaaataattccattattttagaaatc 136  Q
    || |||| | |||||||||||||| |||||    
T  37459739 ttttaaagtgattccattattttaaaaatc 37459710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 2248927 - 2248853
Alignment:
Q  70 aagagttacaactcttg-tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    ||||||||||||||||| ||||||||||  |||||| |||||||| | |||||||||||||||||||| ||||||    
T  2248927 aagagttacaactcttgctgaagagttactacttttggttctaaagtgattccattattttagaaatcaccaaca 2248853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 12852023 - 12852079
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  12852023 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 12852079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 12857136 - 12857192
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  12857136 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 12857192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 26051368 - 26051424
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26051368 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26051424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 26056481 - 26056537
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26056481 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26056537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 26060727 - 26060783
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26060727 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26060783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 26065840 - 26065896
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  26065840 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 26065896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 29827742 - 29827885
Alignment:
Q  1 tgaatcaatgttatggttcattaatcactgatttgccaaaggttccaatacatatgaatgattcacgtaaagagttacaactctt-gtgaagagttataa 99  Q
    ||||||||||  | |||||||||| |||   ||||||||||||||||||  ||||||| ||||| | |  ||| ||||||||||| ||||||||||| ||    
T  29827742 tgaatcaatgcaaaggttcattaaacacctgtttgccaaaggttccaatctatatgaaagattcccatgcagaattacaactcttggtgaagagttacaa 29827841  T
Q  100 ctttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||  ||||||| | |||||||| |||| |||||| ||||||    
T  29827842 cttttgattctaaagtgattccattcttttggaaatcaccaaca 29827885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 4050155 - 4050211
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  4050155 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 4050211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 4055289 - 4055345
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  4055289 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 4055345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 5481345 - 5481289
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  5481345 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 5481289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 6852809 - 6852753
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  6852809 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 6852753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 6857912 - 6857856
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  6857912 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 6857856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 8458659 - 8458715
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  8458659 tgaagagttacaacttttagttctaaagtgattccattattttggaaatcaccaaca 8458715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 8465097 - 8465153
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  8465097 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 8465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 10584715 - 10584659
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  10584715 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 10584659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 10672795 - 10672739
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  10672795 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 10672739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 10677908 - 10677852
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  10677908 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 10677852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 33702456 - 33702400
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  33702456 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaaca 33702400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 20891496 - 20891550
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaa 141  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||| ||||    
T  20891496 tgaagagttacaacttttggttctaaagtgattccattattttggaaatcaccaa 20891550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 10591152 - 10591103
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatc 136  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| ||||||    
T  10591152 tgaagagttacaacttttggttctaaagtgattccattattttggaaatc 10591103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 1302101 - 1302053
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaat 135  Q
    |||||||||| ||||||| |||||||| | ||||||||||||| |||||    
T  1302101 tgaagagttacaacttttggttctaaagtgattccattattttggaaat 1302053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 31076257 - 31076201
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||| | ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  31076257 tgaagagtcacaacttttggttctaaagtgattccattattttggaaatcaccaaca 31076201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 31081364 - 31081308
Alignment:
Q  87 tgaagagttataactttttgttctaaaataattccattattttagaaatctccaaca 143  Q
    |||||||| | ||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  31081364 tgaagagtcacaacttttggttctaaagtgattccattattttggaaatcaccaaca 31081308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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