View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11007_low_15 (Length: 266)
Name: NF11007_low_15
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 28595669 - 28595931
Alignment:
| Q |
1 |
ataatgatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaa-gtttggccaattcagaccttccaaaa |
99 |
Q |
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| T |
28595669 |
ataatcatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaaagtttggccaattcagaccttccaaaa |
28595768 |
T |
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| Q |
100 |
tttacagatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaaccca- |
198 |
Q |
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| T |
28595769 |
tttacagatgatctaacaactctaatatcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactaacccat |
28595868 |
T |
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| Q |
199 |
--nnnnnnncaaacatgcaaatctttatatttgtgtatatgactaatttgtaaacctatgctt |
259 |
Q |
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| T |
28595869 |
ttttttttcaaaacatggaaatctttatatttgtgtatatgactaatttgtaaacctatgctt |
28595931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 32493890 - 32494152
Alignment:
| Q |
1 |
ataatgatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaat |
100 |
Q |
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| T |
32493890 |
ataatgatgcaggtgggtggtccgtcatggacggtaaaactcggaagaagagactccaccgttgctagcaaaagtcaggccaattcagaccttccaaaat |
32493989 |
T |
|
| Q |
101 |
ttacagatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaacccann |
200 |
Q |
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| T |
32493990 |
ttacggatgatctaacaactcttatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactgacccatt |
32494089 |
T |
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| Q |
201 |
nnnnncaaacatgcaaa----tctttatatttgtgtatatgactaatttgtaaacctatgctt |
259 |
Q |
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| T |
32494090 |
tgtttcaaacatgcacatgtttatttatatttgtgtgtatggctgatttataaacctatgctt |
32494152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 28592312 - 28592181
Alignment:
| Q |
5 |
tgatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttac |
104 |
Q |
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| T |
28592312 |
tgatgcaggtgggtggtccatcatggacggtaaaacttggacggagagactctaccacagcaagcaaaagtttggccaatactgaccttccgttatttac |
28592213 |
T |
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| Q |
105 |
agatgatctaacaactcttatatcccatttta |
136 |
Q |
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| T |
28592212 |
ggacgatcttacaactcttatatctcatttta |
28592181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 28587203 - 28587083
Alignment:
| Q |
16 |
ggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaagtttggccaattcagaccttccaaaatttacagatgatctaa |
115 |
Q |
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||||| || |||||||| |||||||||||||||||||||||||| | || || ||||||||||||||| | |||||||| ||||||||| ||||| | |
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| T |
28587203 |
ggtggcccgtcatggacagtaaaacttggaagaagagactctacaacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatctta |
28587104 |
T |
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| Q |
116 |
caactcttatatcccatttta |
136 |
Q |
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||||||||||||| ||||||| |
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| T |
28587103 |
caactcttatatctcatttta |
28587083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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