View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11007_low_18 (Length: 239)

Name: NF11007_low_18
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11007_low_18
NF11007_low_18
[»] chr3 (17 HSPs)
chr3 (22-231)||(2659858-2660067)
chr3 (52-216)||(2501326-2501487)
chr3 (48-216)||(2491253-2491415)
chr3 (51-216)||(2645065-2645227)
chr3 (48-216)||(9562694-9562856)
chr3 (116-226)||(7334992-7335102)
chr3 (87-216)||(7443725-7443854)
chr3 (116-231)||(2475885-2476000)
chr3 (70-216)||(7325128-7325274)
chr3 (127-231)||(13497426-13497530)
chr3 (126-231)||(2630579-2630684)
chr3 (125-216)||(2474354-2474445)
chr3 (140-226)||(755353-755439)
chr3 (116-226)||(9566543-9566653)
chr3 (111-226)||(9595347-9595462)
chr3 (125-226)||(7398893-7398994)
chr3 (145-221)||(747851-747927)
[»] scaffold0097 (1 HSPs)
scaffold0097 (51-206)||(33827-33979)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 22 - 231
Target Start/End: Complemental strand, 2660067 - 2659858
Alignment:
Q  22 gccgtcgattcttctgaatcactcgtggtggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttc 121  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2660067 gccgtcgattcttctgactcactcgtggtggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttc 2659968  T
Q  122 catctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttat 221  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659967 cagctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttat 2659868  T
Q  222 ctctgctcct 231  Q
     |||| ||||    
T  2659867 ttctgatcct 2659858  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 2501326 - 2501487
Alignment:
Q  52 gaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgaga 151  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   | ||| |||||| |||||| ||| |||||  |||||||||    
T  2501326 gaaacaaccaacactcagaggcagcgattggtcgccggaaccctaacatgcccaccg---ctggaacttccaactcttcttttcgatcttttgcctgaga 2501422  T
Q  152 ttctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattct 216  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  2501423 ttctgtgcaggcttccggtgaaattactagtacagcttcgatgcctttgtaagttcttcaattct 2501487  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 48 - 216
Target Start/End: Original strand, 2491253 - 2491415
Alignment:
Q  48 ggtggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcct 147  Q
    |||||||||||||| |||||||| | | ||||   || ||||||||||||||||||||||    |||||||||||| |||||||||||||| ||||||||    
T  2491253 ggtggaaacaaccaccactcagaagaatcgat---ccaccggaaccctaacatgcccacca---ccggagcttccaactcttccttttgatgtcctgcct 2491346  T
Q  148 gagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattct 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  2491347 gagattctgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaagtttttcaattct 2491415  T

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Target: chr3; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 51 - 216
Target Start/End: Complemental strand, 2645227 - 2645065
Alignment:
Q  51 ggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgag 150  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||| || | |||||   | |||||||||| |||||||| |||||||||| ||||||    
T  2645227 ggaaacaaccaacactcaaaggcggcgattggtcgccggaaccctaaaatacacaccg---ctggagcttccaactcttcctgttgatctccttcctgag 2645131  T
Q  151 attctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattct 216  Q
    ||||| |||||||||||||||||||||||  |||||||||||| |||||||||||| |||||||||    
T  2645130 attctttgtaggcttccggtgaaattacttatacagcttcgatacgtttgtaagttattcaattct 2645065  T

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Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 216
Target Start/End: Complemental strand, 9562856 - 9562694
Alignment:
Q  48 ggtggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcct 147  Q
    |||||||||||||| |||||||||| ||||||   || ||||||||||||||||||||||    |||||||||||| |||||||||||||||| ||||||    
T  9562856 ggtggaaacaaccaccactcagaggaagcgat---ccaccggaaccctaacatgcccacca---ccggagcttccaactcttccttttgatcttctgcct 9562763  T
Q  148 gagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattct 216  Q
    || ||||| ||||||||||||||||||||||| ||||||||||||||  | ||| |||| |||||||||    
T  9562762 gaaattctctgtaggcttccggtgaaattacttgtacagcttcgatgtctgtgtgagttcttcaattct 9562694  T

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Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 7335102 - 7334992
Alignment:
Q  116 agcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattc 215  Q
    |||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| || |||||    
T  7335102 agcttcctactcttccgtttgatgtcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgtctctgtaagttctttaattc 7335003  T
Q  216 tcttatctctg 226  Q
    | |||||||||    
T  7335002 tgttatctctg 7334992  T

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Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 7443854 - 7443725
Alignment:
Q  87 cggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacag 186  Q
    |||||||||||||| |||||||||||||||||||||  ||||||| || |||||||| ||||||||||| || |||||||| |||||||||||| ||||     
T  7443854 cggaaccctaacatacccaccggagccggagcttcccactcttcccttcgatctcctccctgagattctctgcaggcttcctgtgaaattactcatacaa 7443755  T
Q  187 cttcgatgcgtttgtaagtttttcaattct 216  Q
    ||||| ||| | |||||||| |||||||||    
T  7443754 cttcggtgcctctgtaagttcttcaattct 7443725  T

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Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 2475885 - 2476000
Alignment:
Q  116 agcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattc 215  Q
    |||||||  ||||||| |||||| |||||||||||||||||| |||| | || || |||||||||||||||||||| ||| |||||||||||||||||||    
T  2475885 agcttcccactcttccctttgatgtcctgcctgagattctgtttaggttacctgtcaaattactcgtacagcttcggtgcctttgtaagtttttcaattc 2475984  T
Q  216 tcttatctctgctcct 231  Q
    |||||| |||| ||||    
T  2475985 tcttatttctgatcct 2476000  T

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Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 216
Target Start/End: Complemental strand, 7325274 - 7325128
Alignment:
Q  70 aggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccgg 169  Q
    ||||| ||||||  ||||||||||||||||| || |||   ||| ||||||||| |||||||||| ||| || | ||||||||||| || |||||||| |    
T  7325274 aggcaacgattgatcgccggaaccctaacattccaaccacggccagagcttccaactcttcctttcgatgtcttacctgagattctctgcaggcttcctg 7325175  T
Q  170 tgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattct 216  Q
    ||||||||||| |||||||||| ||| | |||||||| |||||||||    
T  7325174 tgaaattactcatacagcttcggtgcctctgtaagttcttcaattct 7325128  T

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Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 13497426 - 13497530
Alignment:
Q  127 cttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatctctg 226  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||||| ||||||||| | || |||||||| |||||| | |||||||    
T  13497426 cttccatttgatctcctgcctgagatcctttgtaggcttccggtgaagttacttgtacaacttcgatgcctctgcaagttttttaattctttgatctctg 13497525  T
Q  227 ctcct 231  Q
     ||||    
T  13497526 atcct 13497530  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 2630579 - 2630684
Alignment:
Q  126 tcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatctct 225  Q
    |||||| |||||| | ||| |||| ||||| |||| ||||||||||||||||||||| |||||||| ||| |||||||||| |||||||| ||||| |||    
T  2630579 tcttccgtttgatgttctgactgacattctctgtatgcttccggtgaaattactcgtgcagcttcggtgcctttgtaagttcttcaattcacttatttct 2630678  T
Q  226 gctcct 231  Q
    | ||||    
T  2630679 gatcct 2630684  T

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Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 216
Target Start/End: Original strand, 2474354 - 2474445
Alignment:
Q  125 ctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattct 216  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| || |||||||  ||||||||||| ||| | |||||||| || ||||||    
T  2474354 ctcttccctttgatctcctgcctgagattctctgtaggcttcccgtcaaattacctgtacagcttcggtgcctctgtaagttctttaattct 2474445  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 755439 - 755353
Alignment:
Q  140 tcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatctctg 226  Q
    |||||||||||||||| |||||||||||  | |||||||||| |||||| || ||| | ||||||| ||||||||||||||| ||||    
T  755439 tcctgcctgagattctttgtaggcttcccatcaaattactcggacagctgcggtgcctctgtaagtctttcaattctcttatttctg 755353  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 9566653 - 9566543
Alignment:
Q  116 agcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattc 215  Q
    |||||||  ||||||| || ||| || ||||||||||||| |||||||||||  |||||||||||| ||||||||| ||| | || ||||  ||||||||    
T  9566653 agcttcctactcttcccttcgatgtcttgcctgagattctttgtaggcttcccatgaaattactcggacagcttcggtgcctctgcaagtccttcaattc 9566554  T
Q  216 tcttatctctg 226  Q
    |||||| ||||    
T  9566553 tcttatttctg 9566543  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 9595462 - 9595347
Alignment:
Q  111 gccggagcttccatctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttc 210  Q
    ||||||||||||| |||||||||| |||||  |  |||| ||||| || |||||||| ||||| || ||| | || ||||||||||| |||||||| ||     
T  9595462 gccggagcttccaactcttcctttcgatctaattgctgaaattctatgcaggcttcctgtgaagtttctctttcaacttcgatgcgtatgtaagttcttt 9595363  T
Q  211 aattctcttatctctg 226  Q
     |||||||||| ||||    
T  9595362 cattctcttatttctg 9595347  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 226
Target Start/End: Complemental strand, 7398994 - 7398893
Alignment:
Q  125 ctcttccttttgatctcctgcctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttatctc 224  Q
    ||||||| || ||||||||| | ||||||||||||||||| || |||||  | ||| | || ||||||||| | |||||||| |||||| | ||||||||    
T  7398994 ctcttccattagatctcctgtcagagattctgtgtaggctcccagtgaagcttctccttcaacttcgatgcctctgtaagttcttcaatacccttatctc 7398895  T
Q  225 tg 226  Q
    ||    
T  7398894 tg 7398893  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 747927 - 747851
Alignment:
Q  145 cctgagattctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtttttcaattctcttat 221  Q
    |||||| ||||  ||||||||||  | |||||||||||||| ||||||||| | |||||||||||  ||||||||||    
T  747927 cctgagtttctcggtaggcttcccatcaaattactcgtacaacttcgatgcctctgtaagtttttttattctcttat 747851  T

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Target: scaffold0097 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 51 - 206
Target Start/End: Original strand, 33827 - 33979
Alignment:
Q  51 ggaaacaaccaacactcagaggcagcgattggccgccggaaccctaacatgcccaccggagccggagcttccatctcttccttttgatctcctgcctgag 150  Q
    |||||||||||| ||||| || |||||||||||| ||||||||||||||| |||||||   |||||||||||| ||||||||||||||||| | ||||||    
T  33827 ggaaacaaccaatactcaaagacagcgattggccaccggaaccctaacatacccaccg---ccggagcttccaactcttccttttgatctcatacctgag 33923  T
Q  151 attctgtgtaggcttccggtgaaattactcgtacagcttcgatgcgtttgtaagtt 206  Q
    ||||| |||||||||||||| ||||||||| |||| || |||||| | ||||||||    
T  33924 attctatgtaggcttccggtcaaattactcatacaactccgatgcctctgtaagtt 33979  T

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