View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11007_low_22 (Length: 209)

Name: NF11007_low_22
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11007_low_22
NF11007_low_22
[»] chr6 (5 HSPs)
chr6 (1-209)||(31787071-31787285)
chr6 (50-98)||(31787264-31787312)
chr6 (50-98)||(31787387-31787435)
chr6 (3-36)||(31787037-31787070)
chr6 (140-169)||(31787345-31787374)


Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 31787071 - 31787285
Alignment:
Q  1 ttccatagccagttgttccatgacctgttccagtgcctgtcccataagtattttgttcagtaccaggaatcttctccttaatcttgtccataaccccttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31787071 ttccatagccagttgttccatgacctgttccagtgcctgtcccataagtattttgttcagtaccaggaatcttctccttaatcttgtccataaccccttt 31787170  T
Q  101 ctctccatgttgttgatgacctacaccactagcaccataaccagttgttccata------tcctgttcctgtccctgtcccatgggtatattgattttga 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||| |||||||||||||||    
T  31787171 ctctccatgttgttgatgacctacaccactagcaccataaccagttgttccatatcctgttcctgttcctgtccctgtcccatgagtatattgattttga 31787270  T
Q  195 tcagtaccaggaatt 209  Q
    |||||||||||||||    
T  31787271 tcagtaccaggaatt 31787285  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 31787264 - 31787312
Alignment:
Q  50 attttgttcagtaccaggaatcttctccttaatcttgtccataacccct 98  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||    
T  31787264 attttgatcagtaccaggaattttctccttaatcttgtccataacccct 31787312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 31787387 - 31787435
Alignment:
Q  50 attttgttcagtaccaggaatcttctccttaatcttgtccataacccct 98  Q
    |||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  31787387 attttgatcagtaccaggaattttctccttaatcttgtccattacccct 31787435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 31787037 - 31787070
Alignment:
Q  3 ccatagccagttgttccatgacctgttccagtgc 36  Q
    ||||||||||||||||||||||||||||||||||    
T  31787037 ccatagccagttgttccatgacctgttccagtgc 31787070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 169
Target Start/End: Original strand, 31787345 - 31787374
Alignment:
Q  140 accagttgttccatatcctgttcctgtccc 169  Q
    ||||||||||||||||||||||||||||||    
T  31787345 accagttgttccatatcctgttcctgtccc 31787374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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