View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11007_low_23 (Length: 202)

Name: NF11007_low_23
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11007_low_23
NF11007_low_23
[»] chr3 (23 HSPs)
chr3 (1-197)||(2659552-2659748)
chr3 (3-197)||(2644768-2644962)
chr3 (3-197)||(2501611-2501802)
chr3 (104-197)||(2476183-2476276)
chr3 (1-197)||(9595054-9595247)
chr3 (16-197)||(9562388-9562566)
chr3 (101-197)||(7443413-7443509)
chr3 (104-196)||(2630867-2630959)
chr3 (103-197)||(2474651-2474744)
chr3 (104-197)||(9566247-9566343)
chr3 (3-81)||(7324950-7325028)
chr3 (104-193)||(2635220-2635309)
chr3 (157-197)||(2491681-2491721)
chr3 (1-197)||(679635-679828)
chr3 (1-75)||(747672-747746)
chr3 (105-194)||(7324843-7324932)
chr3 (104-197)||(7334693-7334786)
chr3 (15-83)||(2491539-2491607)
chr3 (1-65)||(2630779-2630843)
chr3 (146-197)||(755027-755078)
chr3 (3-75)||(755167-755239)
chr3 (21-65)||(2476115-2476159)
chr3 (156-196)||(13497789-13497829)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 5e-98; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 2659748 - 2659552
Alignment:
Q  1 ctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctgat 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2659748 ctccaatcccttcaattttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacatcactgcatcgacctgat 2659649  T
Q  101 gatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2659648 gatgagctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttatggaacccttccattagaaagtttaagttattgcctcct 2659552  T

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Target: chr3; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 3 - 197
Target Start/End: Complemental strand, 2644962 - 2644768
Alignment:
Q  3 ccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaata---ctctcacaaatggacattactgcatcgacctga 99  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||| |||||| ||   |||||||||| ||||||  ||| || | ||||     
T  2644962 ccaatcccttcacctttttctacttctaccattgttacacaaacacaactttaccttcctactagtactctcacaaacggacatctctggatgggcctgc 2644863  T
Q  100 tgatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    ||   ||||||||||| ||| | ||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2644862 tg---tgctcttgcgacggcgtgttttgtggtcagctcaatgatgattcttatttcttgtggaacccttccgttagaaagtttaagttattgcctcct 2644768  T

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Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 3 - 197
Target Start/End: Original strand, 2501611 - 2501802
Alignment:
Q  3 ccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcat-cgacctgatg 101  Q
    ||||||||||  | ||| ||||||||| | ||| ||||||||||||||||  ||||||||| |||||||||||||||| || |  || | || |    ||    
T  2501611 ccaatccctttgcctttttctacttctgcagttcttacacaaacacaactacacattcctagtactctcacaaatggaaatcatggcgtgcgtc----tg 2501706  T
Q  102 atgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    || ||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2501707 atttgctcttgcgatggcgtgttttgtggtcagctcaataatgattcttatttcttgtggaacccttccattacaaagtttaagttattgcctcct 2501802  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 2476183 - 2476276
Alignment:
Q  104 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||    
T  2476183 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaaatttcagctattgcctcct 2476276  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 9595247 - 9595054
Alignment:
Q  1 ctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctgat 100  Q
    |||||||||  ||| |||| |||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||  | | | | | ||| | ||    
T  9595247 ctccaatccactcagttttttctacttctaccattgttacacagacacaactttaccctcctaatactctcacaaatggatctaaatacgtggacgt-at 9595149  T
Q  101 gatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
      ||||||||||||||||||| |||||| ||   |||||   |||||||||| | ||||||||||||||||||||||| ||||||||||||||||||    
T  9595148 --tgtgctcttgcgatggcattttttgttgttttctcaagcctggttcttatgttttgtggaacccttccattagaaaatttaagttattgcctcct 9595054  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 9562566 - 9562388
Alignment:
Q  16 ttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctgatgatgtgctcttgcga 115  Q
    |||| ||||||||||||| ||||||||| ||||||||||||  |||||||| ||||||||||  || | ||| |  |||||  |  ||||||| || |||    
T  9562566 ttttttctacttctaccgctgttacacagacacaactttacgctcctaatattctcacaaatccacgtaacttcc-cgaccgta--atgtgctgttccga 9562470  T
Q  116 tggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
     |||||| |||||||| ||||||||  |||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||    
T  9562469 aggcatactttgtggtcagctcaatcttggttcttattttttgtacaacccttccattagaaaatttaagttattgcctcct 9562388  T

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Target: chr3; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 7443509 - 7443413
Alignment:
Q  101 gatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    ||||||||||||||||||||||||||| ||| ||||||||  ||||| || |||  ||||||||||||||||| |||||||||||||||| ||||||    
T  7443509 gatgtgctcttgcgatggcatattttgcggtgagctcaatcttggttattgttttgtgtggaacccttccattcgaaagtttaagttattacctcct 7443413  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 2630867 - 2630959
Alignment:
Q  104 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcc 196  Q
    |||||||||||||||||| ||||  |||| | ||  | ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2630867 gtgctcttgcgatggcatctttttgggtatgttctctcatacttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcc 2630959  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 2474651 - 2474744
Alignment:
Q  103 tgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    |||||||||| |||||||| ||||| || | ||||||  |||| |||||||| |||||||||||||||||| |||| ||||||||||||||||||    
T  2474651 tgtgctcttgtgatggcatcttttgcggcacgctcaaagatggctcttattt-ttgtggaacccttccattggaaaatttaagttattgcctcct 2474744  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 9566343 - 9566247
Alignment:
Q  104 gtgctcttgcgatggcatattttgtggtaagctcaataat---ggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    |||||||||||||||||| ||||||||| ||||||||  |   |||| |||||| |||||||||||||| ||||| || ||||||||||||||||||    
T  9566343 gtgctcttgcgatggcatcttttgtggtgagctcaatcttcttggttgttattttttgtggaacccttctattaggaaatttaagttattgcctcct 9566247  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 7325028 - 7324950
Alignment:
Q  3 ccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggac 81  Q
    ||||| ||||| ||||| ||||||||| ||||| ||||||||||||||||  ||||| ||| |||||||||||||||||    
T  7325028 ccaattccttcgcttttttctacttctgccgtttttacacaaacacaactacacatttctagtactctcacaaatggac 7324950  T

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Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 193
Target Start/End: Original strand, 2635220 - 2635309
Alignment:
Q  104 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcc 193  Q
    |||||||||||||||||| ||| | |||  ||||||   ||||||||||||  |||||||||||||||||||||| | ||||||||||||    
T  2635220 gtgctcttgcgatggcatctttagcggtgtgctcaaagctggttcttattttctgtggaacccttccattagaaaatgtaagttattgcc 2635309  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 2491681 - 2491721
Alignment:
Q  157 tgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2491681 tgtggaacccttccattagaaagtttaagttattgcctcct 2491721  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 679828 - 679635
Alignment:
Q  1 ctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacattactgcatcgacctgat 100  Q
    |||||||||| ||  |||| || |||||||||||||||||||| ||||||||||||  |||||||| ||| |||| | ||  | |||   | |||    |    
T  679828 ctccaatcccctcgattttatcaacttctaccgttgttacacatacacaactttaccctcctaatattcttacaatttgaggtaactttgtggac---gt 679732  T
Q  101 gatgtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
     |||||||||||||||||||| |||||  | | ||| ||   |||||||||||| |||||||| |||||| ||||||||| ||||||| | ||||||    
T  679731 aatgtgctcttgcgatggcatcttttgctgaatgctaaaagctggttcttatttgttgtggaatccttccgttagaaagtataagttactccctcct 679635  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 747746 - 747672
Alignment:
Q  1 ctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 75  Q
    |||||||||| ||  |||| |||||||||| |||||||||||| ||||||||||||  |||||||||||| ||||    
T  747746 ctccaatcccctcggttttatctacttctatcgttgttacacatacacaactttaccctcctaatactcttacaa 747672  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 194
Target Start/End: Complemental strand, 7324932 - 7324843
Alignment:
Q  105 tgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcct 194  Q
    |||||||| |||||||| ||||  || | ||||||   |||||||||||  |||||||||||||||||||| || |||||||||||||||    
T  7324932 tgctcttgtgatggcatttttttgggcatgctcaaagttggttcttattatttgtggaacccttccattaggaaatttaagttattgcct 7324843  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 197
Target Start/End: Complemental strand, 7334786 - 7334693
Alignment:
Q  104 gtgctcttgcgatggcatattttgtggtaagctcaataatggttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    ||||| |||||||||||| |||||  || | ||| | |||| ||||||||| |||||||||||||||||||  ||  |||||||||||||||||    
T  7334786 gtgctgttgcgatggcatcttttgctgttatctcgaaaatgattcttattttttgtggaacccttccattaacaaagttaagttattgcctcct 7334693  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 2491539 - 2491607
Alignment:
Q  15 cttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaaatggacat 83  Q
    ||||| ||||||||||||||| ||||||| || |||||||||  ||||| || ||||||||||||||||    
T  2491539 cttttttctacttctaccgttattacacagacccaactttaccctcctactaatctcacaaatggacat 2491607  T

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Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 2630779 - 2630843
Alignment:
Q  1 ctccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaat 65  Q
    ||||||||||||| ||||| |||||||| ||| ||||| |||||||||||||||||  |||||||    
T  2630779 ctccaatcccttcgcttttttctacttcaaccattgttgcacaaacacaactttaccctcctaat 2630843  T

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Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 755078 - 755027
Alignment:
Q  146 ttcttatttcttgtggaacccttccattagaaagtttaagttattgcctcct 197  Q
    ||||||||| |||||||| |||||||||| ||| ||||||||||||||||||    
T  755078 ttcttattttttgtggaatccttccattacaaaatttaagttattgcctcct 755027  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 755239 - 755167
Alignment:
Q  3 ccaatcccttcacttttctctacttctaccgttgttacacaaacacaactttacattcctaatactctcacaa 75  Q
    |||||||| ||  |||| ||||||||||| ||| ||||||| ||||||||||||  ||| |||||| ||||||    
T  755239 ccaatcccatccattttttctacttctactgtttttacacagacacaactttaccctcccaatactatcacaa 755167  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 2476115 - 2476159
Alignment:
Q  21 tctacttctaccgttgttacacaaacacaactttacattcctaat 65  Q
    |||||||| |||||||||||||| ||||||||||||  |||||||    
T  2476115 tctacttcaaccgttgttacacagacacaactttaccctcctaat 2476159  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 13497789 - 13497829
Alignment:
Q  156 ttgtggaacccttccattagaaagtttaagttattgcctcc 196  Q
    ||||||||||||||||||||||| || ||| ||||||||||    
T  13497789 ttgtggaacccttccattagaaaattcaagatattgcctcc 13497829  T

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