View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11007_low_5 (Length: 507)
Name: NF11007_low_5
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 22 - 499
Target Start/End: Original strand, 8683426 - 8683903
Alignment:
| Q |
22 |
ataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatgagaggga |
121 |
Q |
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| T |
8683426 |
ataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatgagaggga |
8683525 |
T |
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| Q |
122 |
ttcaaggtgctttgatcataagttcaagtttccaaatggctattggannnnnnnnnnnnnggagaaatgctgtcaggttagtatctgtaacgtcttttgt |
221 |
Q |
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| T |
8683526 |
ttcaaggtgctttgatcataagttcaagtttccaaatggctattggattttttggtttttggagaaatgctgtcaggttagtatctgtaacttcttttgt |
8683625 |
T |
|
| Q |
222 |
ttcgatttttatgtaaatctttgatttgttatcttatatgttcattgattcattcacaggttccttagtccactttctgtagttccatatgtaacattcg |
321 |
Q |
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| T |
8683626 |
ttcgatttttatgtaaatctttgatttgttatcttatatgttcattgattcattcacaggttccttagtccactttctgtagttccatatgtaacattcg |
8683725 |
T |
|
| Q |
322 |
ctggacttggtctctatcaacttggttttccaatggtgaagaattgaggattaaagaatacaacccttttgattttttgcttcttaacttctctatttat |
421 |
Q |
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| T |
8683726 |
ctggacttggtctctatcaacttggttttccaatggtgaagaattgaggattaaagaatacaacccttttgattttttgcttcttaacttctctatttat |
8683825 |
T |
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| Q |
422 |
gatttgaaaattaattttgcagcttgcgaaatgtgttgaaattggacttcctgcattaattgttatggttttcatctc |
499 |
Q |
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| T |
8683826 |
gatttgaaaattaattttgcagcttgcgaaatgtgttgaaattggacttcctgcattaattgttatggttttcatctc |
8683903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 278 - 358
Target Start/End: Original strand, 47579890 - 47579970
Alignment:
| Q |
278 |
caggttccttagtccactttctgtagttccatatgtaacattcgctggacttggtctctatcaacttggttttccaatggt |
358 |
Q |
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| T |
47579890 |
caggttccttagcccactttgtgttgtcccttatgtaacattcactggacttggtctctatcatcttggttttcctatggt |
47579970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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