View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11007_low_6 (Length: 491)
Name: NF11007_low_6
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 66 - 481
Target Start/End: Complemental strand, 28938257 - 28937841
Alignment:
| Q |
66 |
aatggaagtggtggaaaacactggtttcgacaagacgacccaaaatattgtgctaggtataatt-atgtttgggtaaagttgtcgcacccaccttctttc |
164 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
28938257 |
aatggaagtggtggaaaacactggtttctacaagacgacccaaaatattgtgcaatgtataatttatgtttgggtaaagttgtcgcacccaccttctttc |
28938158 |
T |
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| Q |
165 |
ctgcatgtttcctgagagattgagagtctttattgtgctgtggtccacttgcatattatttcatgtgtttaaggttgtggtcctttattgtttgattgag |
264 |
Q |
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| T |
28938157 |
ctgcatgtttcctgagagattgagagtctttattgtgctgtggtccacttgcatattatttcatgtgtttaaggttgtggtcctttattgtttgattgag |
28938058 |
T |
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| Q |
265 |
ttgttcaataatgtagaacacatgtgttgtttgtcttgcttgaatctgtatttttgttgaatgttcttgtccacatatctacaagtcagttgaagtgcat |
364 |
Q |
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| T |
28938057 |
ttgttcaataatgtagaacacatgtgttgtttgtcttgtttgaatctgtatttttgttgaatgttcttgtccacatatctacaagtcagttgaagtgcat |
28937958 |
T |
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| Q |
365 |
gaggtcaggactcgagttaataatggtggtactattgtaaattactagtcaaaatgtatgtcattgaatcactctgctcccttgcctcttgccccttgcc |
464 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28937957 |
gaggtcaggactcgagttaataatggcggtactattgtaaattactagtcaaaatgtatgtcattgaatcactctgctcccttgcctcttgccccttgcc |
28937858 |
T |
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| Q |
465 |
cctctccgatgcctatg |
481 |
Q |
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| T |
28937857 |
cctctccgatgcctatg |
28937841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 28938336 - 28938256
Alignment:
| Q |
18 |
cattccacctgtttcttcatcgtttcaacaatggcggacacgagcacgaatggaagtggtggaaaacactggtttcgacaa |
98 |
Q |
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| T |
28938336 |
cattccacctgtttcttcatcgtttcaacaatggcaaacacgagcacgaatggaagtggtggaaaacactggtttccacaa |
28938256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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