View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11007_low_7 (Length: 471)
Name: NF11007_low_7
Description: NF11007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11007_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 40367435 - 40367226
Alignment:
| Q |
14 |
cataggctgatcgtggtagataattaaccgattaaagataaaagagaattaagcttctgctttagaaagatttgcagcatgacataaagtgagtctgagt |
113 |
Q |
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| T |
40367435 |
cataggctgatcgtggtagataattaaccgattaaagatataagagaattaagcttctgctttagaaagatttgcagcatgacataaagtgagtctgagt |
40367336 |
T |
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| Q |
114 |
catctatccattgataattcaaattcataataatgaaagggaggaggacaaaaacatatatcatattatatgatagtcaaattatatggaaaagaaaact |
213 |
Q |
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| T |
40367335 |
catctatccattgataattcaaattcataataatgaaagggaggaggacaaaaacatatatcatattatatgatagtcaaattatatggaaaagaaaact |
40367236 |
T |
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| Q |
214 |
ttaaatacag |
223 |
Q |
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|||||||||| |
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| T |
40367235 |
ttaaatacag |
40367226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 249 - 457
Target Start/End: Original strand, 1359268 - 1359471
Alignment:
| Q |
249 |
tagtgccctcatcgttactcgactatataaactatagtcacatgatcgtgtgcatgccatgcttcctnnnnnnnttgttgtggggattatcccttatttt |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
1359268 |
tagtgccctcatcgttactcgactatataaactatagtcacatgatcgtgtgcatgc-----ttcctaaaaaaattgttgtggggattatcccttatttt |
1359362 |
T |
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| Q |
349 |
cttaaataaataaatttaatgacaagaagtggacgatattaagtcctctnnnnnnntggacgttaaggatgaattattggcatgctctgagttagaaccc |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1359363 |
cttaaataaataaatttaatgacaagaagtggacgatattaagtcctctaaaaaaatggacgttaaggatgaattattggcatgctctgagttagaaccc |
1359462 |
T |
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| Q |
449 |
ttcttattg |
457 |
Q |
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||||||||| |
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| T |
1359463 |
ttcttattg |
1359471 |
T |
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